Gene: AT5G16780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G16780
  • Transcript Identifier AT5G16780.2
  • Gene Type Coding gene
  • Location Chr5 : 5517784-5521566 : negative

Gene Family Information

  • ID HOM05D003241
  • #Genes/#Species 211/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G16780.2
  • symbol DOT2
  • Alias MDF,MERISTEM-DEFECTIVE
  • full_name DEFECTIVELY ORGANIZED TRIBUTARIES 2
  • uniprot Q9LFE0

Descriptions

  • Description SART-1 family
  • Computational description DEFECTIVELY ORGANIZED TRIBUTARIES 2 (DOT2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SART-1 protein (InterPro:IPR005011); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT3G14700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000481
IBA
Gene Ontologymaturation of 5S rRNA1
GO:0045292
IBA
Gene OntologymRNA cis splicing, via spliceosome1
GO:0048528
IMP
Gene Ontologypost-embryonic root development2
GO:0009933
IMP
Gene Ontologymeristem structural organization2
GO:0048367
IMP
Gene Ontologyshoot system development3
GO:0048366
IMP
Gene Ontologyleaf development3
GO:0048364
IMP
Gene Ontologyroot development3
GO:0010588
IMP
Gene Ontologycotyledon vascular tissue pattern formation3
GO:0010305
IMP
Gene Ontologyleaf vascular tissue pattern formation3
GO:0010087
IMP
Gene Ontologyphloem or xylem histogenesis3
GO:0009908
IMP
Gene Ontologyflower development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus4
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005011 SNU66/SART1 family
Mapman id Description
35.1 not assigned.annotated