Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 1.5e-83 312.8 154 100.0
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 1.2e-24 117.1 126 49.2
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 4.6e-24 115.2 113 53.1
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 3.0e-23 112.5 93 57.0
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 9.9e-19 97.4 128 46.1
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 2.2e-18 96.3 85 56.5
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 2.1e-16 89.7 86 51.2
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.1e-14 84.0 86 47.7
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.5e-14 83.6 91 46.2
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 3.3e-14 82.4 76 53.9
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 3.3e-14 82.4 121 45.5
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 4.3e-14 82.0 118 39.8
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.3e-13 80.5 98 46.9
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.6e-13 80.1 77 53.2
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 3.6e-13 79.0 55 69.1
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 4.8e-13 78.6 110 42.7
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.8e-13 78.6 90 46.7
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 6.2e-13 78.2 102 43.1
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 8.1e-13 77.8 76 55.3
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 8.1e-13 77.8 77 49.4
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 1.1e-12 77.4 79 53.2
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.8e-12 76.6 87 48.3
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 2.4e-12 76.3 98 46.9
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 2.4e-12 76.3 62 61.3
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.1e-12 75.9 98 43.9
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 3.1e-12 75.9 97 42.3
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.1e-12 75.9 107 40.2
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 3.1e-12 75.9 77 49.4
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.1e-12 75.9 77 49.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 3.1e-12 75.9 88 46.6
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.1e-12 75.9 77 46.8
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 3.1e-12 75.9 93 44.1
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 3.1e-12 75.9 93 44.1
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 4.0e-12 75.5 108 41.7
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 5.3e-12 75.1 75 48.0
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.3e-12 75.1 77 49.4
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.3e-12 75.1 77 49.4
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.3e-12 75.1 77 49.4
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 6.9e-12 74.7 103 41.7
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.2e-11 73.9 81 44.4
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.2e-11 73.9 118 38.1
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.6e-11 72.8 107 43.9
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.6e-11 72.8 107 43.9
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-11 72.8 107 43.9
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 3.4e-11 72.4 102 40.2
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 3.4e-11 72.4 102 40.2
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 3.4e-11 72.4 108 40.7
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 4.5e-11 72.0 90 44.4
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 4.5e-11 72.0 100 42.0
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 7.6e-11 71.2 55 58.2
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.6e-11 71.2 60 55.0
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.6e-11 71.2 60 55.0
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 9.9e-11 70.9 55 56.4
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 9.9e-11 70.9 115 41.7
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.3e-10 70.5 100 41.0
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.3e-10 70.5 102 41.2
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.3e-10 70.5 82 42.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.7e-10 70.1 83 45.8
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 1.7e-10 70.1 86 46.5
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.7e-10 70.1 76 43.4
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.2e-10 69.7 101 43.6
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.2e-10 69.7 67 49.3
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.2e-10 69.7 80 45.0
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.9e-10 69.3 86 44.2
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.9e-10 69.3 115 41.7
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 3.8e-10 68.9 120 39.2
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 4.9e-10 68.6 100 39.0
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 4.9e-10 68.6 81 46.9
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.9e-10 68.6 89 43.8
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 6.4e-10 68.2 75 45.3
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 6.4e-10 68.2 82 47.6
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 8.4e-10 67.8 85 44.7
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 1.4e-09 67.0 80 45.0
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.4e-09 67.0 67 44.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.9e-09 66.6 80 42.5
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-09 66.2 107 39.3
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.4e-09 66.2 107 39.3
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.4e-09 66.2 59 49.2
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.2e-09 65.9 89 42.7
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 3.2e-09 65.9 97 40.2
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 3.2e-09 65.9 85 41.2
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 3.2e-09 65.9 85 41.2
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.2e-09 65.9 55 54.5
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 3.2e-09 65.9 56 51.8
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 3.2e-09 65.9 56 51.8
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 5.5e-09 65.1 78 43.6
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 5.5e-09 65.1 80 45.0
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 5.5e-09 65.1 94 36.2
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 7.1e-09 64.7 102 39.2
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 7.1e-09 64.7 71 47.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 7.1e-09 64.7 59 49.2
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 7.1e-09 64.7 108 38.0
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 9.3e-09 64.3 59 49.2
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 9.3e-09 64.3 87 40.2
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 9.3e-09 64.3 86 40.7
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.2e-08 63.9 106 38.7
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.2e-08 63.9 87 40.2
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.2e-08 63.9 87 40.2
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.2e-08 63.9 87 40.2
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.2e-08 63.9 75 42.7
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.2e-08 63.9 67 49.3
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.2e-08 63.9 66 48.5
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.6e-08 63.5 77 44.2
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.6e-08 63.5 104 40.4
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 1.6e-08 63.5 55 52.7
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.1e-08 63.2 70 42.9
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-08 63.2 76 44.7
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.1e-08 63.2 87 41.4
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.7e-08 62.8 98 38.8
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 2.7e-08 62.8 57 52.6
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.5e-08 62.4 53 47.2
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 3.5e-08 62.4 105 37.1
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 3.5e-08 62.4 96 36.5
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.5e-08 62.4 86 39.5
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 4.6e-08 62.0 89 40.4
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.6e-08 62.0 59 45.8
GSVIVG01024953001 Vitis vinifera HOM05D004190 ORTHO05D004692 4.6e-08 62.0 63 44.4
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.9e-08 61.2 98 37.8
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 7.9e-08 61.2 83 39.8
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.3e-07 60.5 63 46.0
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.3e-07 59.7 50 50.0
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 3.0e-07 59.3 60 48.3
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 5.1e-07 58.5 42 66.7
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 5.1e-07 58.5 42 66.7
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 5.1e-07 58.5 73 39.7
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 5.1e-07 58.5 57 47.4
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 8.7e-07 57.8 71 43.7
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 8.7e-07 57.8 82 40.2
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.1e-06 57.4 71 38.0
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 1.9e-06 56.6 91 40.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.9e-06 56.6 77 37.7
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.5e-06 56.2 75 40.0
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.5e-06 56.2 86 38.4
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 2.5e-06 56.2 56 44.6
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 3.3e-06 55.8 72 43.1
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 5.6e-06 55.1 112 34.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 7.4e-06 54.7 80 38.8


User provided reference genes

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