Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.5e-228 795.8 398 100.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 6.2e-182 641.0 399 79.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.1e-175 620.2 380 80.8
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 3.3e-175 618.6 398 76.6
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 3.3e-175 618.6 390 78.2
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.3e-175 618.2 398 76.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 9.6e-175 617.1 378 81.0
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.8e-174 615.5 387 80.4
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 8.1e-174 614.0 378 80.4
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 1.8e-173 612.8 386 80.1
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 3.1e-173 612.1 387 77.8
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 3.1e-173 612.1 380 79.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 6.9e-173 610.9 387 77.5
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 6.9e-173 610.9 410 76.3
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 9.0e-173 610.5 380 78.7
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.2e-172 610.1 399 77.2
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.0e-172 609.4 376 80.1
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 3.4e-172 608.6 378 79.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 4.5e-172 608.2 384 78.9
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 5.8e-172 607.8 389 77.1
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 5.8e-172 607.8 398 77.4
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 7.6e-172 607.4 389 77.1
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 7.6e-172 607.4 381 78.7
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 7.6e-172 607.4 381 78.7
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 9.9e-172 607.1 378 79.1
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.7e-171 606.3 385 77.9
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.7e-171 606.3 375 79.2
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 2.2e-171 605.9 363 81.5
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.2e-171 605.9 362 81.8
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.8e-171 605.1 381 78.7
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 8.4e-171 604.0 354 83.3
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 8.4e-171 604.0 360 82.8
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.1e-170 603.6 357 82.4
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.1e-170 603.6 372 79.3
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.1e-170 603.6 328 86.9
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.4e-170 603.2 353 82.2
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.4e-170 603.2 367 80.7
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.4e-170 603.2 355 82.0
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.9e-170 602.8 414 73.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.9e-170 602.8 405 74.3
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.5e-170 602.4 439 69.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 2.5e-170 602.4 400 74.5
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 2.5e-170 602.4 373 78.6
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 4.2e-170 601.7 353 81.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.2e-169 600.1 385 76.6
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.2e-169 600.1 382 77.0
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.6e-169 599.7 354 82.2
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 2.7e-169 599.0 353 81.6
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 3.5e-169 598.6 354 81.9
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 4.6e-169 598.2 384 77.3
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 4.6e-169 598.2 403 74.9
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 7.9e-169 597.4 352 82.1
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.0e-168 597.0 366 78.7
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.3e-168 596.7 408 75.2
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 5.1e-168 594.7 355 80.6
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 2.5e-167 592.4 365 78.9
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.6e-166 589.7 377 76.7
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.6e-166 589.7 380 77.1
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.7e-166 588.6 374 77.5
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.7e-166 588.6 372 80.4
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 3.1e-165 585.5 370 77.0
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.2e-163 579.3 395 74.2
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.5e-162 575.9 358 79.3
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.1e-161 572.8 358 78.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.1e-161 572.8 351 80.3
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 6.1e-161 571.2 365 78.4
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.3e-160 570.1 379 75.7
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.8e-160 569.7 362 77.9
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 2.3e-160 569.3 384 74.2
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 3.9e-160 568.5 369 76.2
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 5.1e-160 568.2 439 68.3
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 6.7e-160 567.8 384 73.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.1e-159 567.0 401 71.6
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.9e-159 566.2 353 79.3
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 9.7e-159 563.9 370 75.7
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-158 563.5 327 83.2
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-158 563.5 327 83.2
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-158 563.5 355 78.9
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.6e-158 563.1 363 78.2
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.2e-158 562.8 354 77.4
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.8e-158 562.4 375 73.9
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 2.8e-158 562.4 369 75.9
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 2.8e-158 562.4 359 76.9
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.7e-158 562.0 371 74.4
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 6.3e-158 561.2 384 73.2
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 8.2e-158 560.8 391 72.1
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.1e-157 558.9 382 73.8
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.1e-157 558.5 488 62.5
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 4.1e-157 558.5 383 73.9
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.2e-156 557.0 407 71.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 7.7e-156 554.3 397 70.8
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.3e-155 553.5 361 75.9
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 1.3e-155 553.5 360 76.1
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 1.7e-155 553.1 390 71.5
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.2e-155 552.7 377 73.2
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 2.9e-155 552.4 402 68.4
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 8.5e-155 550.8 456 62.5
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.9e-154 549.7 414 68.4
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.0e-151 539.7 370 74.1
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.3e-151 538.9 387 71.1
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 2.4e-149 532.7 364 74.5
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 6.1e-145 518.1 530 56.2
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 4.4e-143 511.9 354 68.9
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 3.7e-142 508.8 564 53.2
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.2e-140 503.8 363 68.6
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.5e-138 496.1 367 66.8
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 8.5e-131 471.1 396 63.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 3.0e-128 462.6 496 53.0
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.0e-119 433.3 384 57.8
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 9.1e-117 424.5 346 63.6
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.0e-108 396.7 382 56.8
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.3e-107 393.3 209 88.0
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 5.6e-106 388.7 367 52.6
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 3.1e-104 382.9 362 55.5
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.3e-102 377.5 203 88.2
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 9.3e-77 291.6 292 49.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 5.6e-58 229.2 393 35.4
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 7.6e-55 218.8 114 89.5
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.9e-54 216.1 122 82.8
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 1.4e-48 198.0 181 60.8
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 5.3e-40 169.5 111 74.8
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 7.2e-37 159.1 211 46.9
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.3e-30 138.3 103 68.0
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 3.2e-29 133.7 72 83.3
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.9e-28 129.0 87 74.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 3.7e-25 120.2 57 93.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 4.1e-24 116.7 55 92.7
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 9.4e-21 105.5 80 67.5
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.6e-18 97.4 53 81.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.7e-15 87.4 57 73.7
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 4.0e-11 73.6 61 60.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 3.4e-10 70.5 70 60.0
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 5.7e-10 69.7 43 74.4
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 5.9e-07 59.7 39 69.2


User provided reference genes

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