Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g22054 Utricularia gibba HOM05D006708 ORTHO05D008321 3.5e-216 754.6 360 100.0
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 3.7e-141 505.4 361 72.3
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 1.0e-90 337.8 370 51.4
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.3e-90 337.4 250 68.4
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 1.7e-90 337.0 250 66.4
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 2.5e-89 333.2 250 65.6
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.5e-86 323.9 250 62.8
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 2.6e-86 323.2 248 63.3
PGR031G3511 Punica granatum HOM05D006708 ORTHO05D008321 2.6e-86 323.2 250 62.0
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 4.4e-86 322.4 248 62.5
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 9.9e-86 321.2 250 62.0
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 1.7e-85 320.5 250 62.0
Atru.chr4.3165 Acer truncatum HOM05D006708 ORTHO05D008321 4.9e-85 318.9 250 61.6
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 4.9e-85 318.9 250 61.6
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 8.4e-85 318.2 250 64.4
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.4e-84 317.4 248 62.5
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 1.4e-84 317.4 250 63.2
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 1.4e-84 317.4 250 62.0
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 1.9e-84 317.0 247 62.3
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 2.4e-84 316.6 247 62.3
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 3.2e-84 316.2 247 62.8
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 4.1e-84 315.8 247 61.9
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 5.4e-84 315.5 250 61.2
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 9.2e-84 314.7 250 62.4
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 9.2e-84 314.7 248 61.7
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 2.7e-83 313.2 250 61.6
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 6.0e-83 312.0 250 61.6
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 6.0e-83 312.0 250 61.6
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 1.0e-82 311.2 250 61.2
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 3.0e-82 309.7 250 60.0
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 5.1e-82 308.9 249 61.0
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 6.6e-82 308.5 250 60.4
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 6.6e-82 308.5 250 61.6
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 8.6e-82 308.1 248 60.5
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 1.5e-81 307.4 250 60.0
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 3.3e-81 306.2 246 61.8
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 3.3e-81 306.2 250 60.0
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 5.6e-81 305.4 251 60.6
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 9.6e-81 304.7 251 61.4
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 1.2e-80 304.3 247 59.9
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 1.6e-80 303.9 250 58.8
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 1.6e-80 303.9 250 61.2
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 1.6e-80 303.9 248 60.1
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 2.1e-80 303.5 250 58.0
A03p34980 Brassica napus HOM05D006708 ORTHO05D008321 3.6e-80 302.8 250 58.4
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 3.6e-80 302.8 253 58.5
PSO210G5816 Papaver somniferum HOM05D006708 ORTHO05D008321 3.6e-80 302.8 250 60.8
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 4.7e-80 302.4 250 60.8
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 4.7e-80 302.4 250 58.0
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 6.2e-80 302.0 250 59.6
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 1.1e-79 301.2 247 59.9
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 1.8e-79 300.4 250 57.6
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 4.0e-79 299.3 250 57.6
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 4.0e-79 299.3 250 57.6
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 4.0e-79 299.3 244 61.1
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 8.9e-79 298.1 247 61.1
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.2e-78 297.7 254 58.7
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 1.5e-78 297.4 237 60.3
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 1.5e-78 297.4 250 58.4
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 9.9e-78 294.7 250 57.6
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 1.7e-77 293.9 250 56.4
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.7e-77 293.9 250 58.0
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 2.9e-77 293.1 261 56.3
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 2.9e-77 293.1 250 56.8
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 4.9e-77 292.4 250 56.8
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 6.4e-77 292.0 244 58.6
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 8.4e-77 291.6 250 56.8
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 1.1e-76 291.2 242 59.5
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 1.1e-76 291.2 242 59.5
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 2.4e-76 290.0 245 57.6
THA.LOC104802685 Tarenaya hassleriana HOM05D006708 ORTHO05D008321 2.4e-76 290.0 250 56.8
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 3.2e-76 289.7 250 56.0
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 7.1e-76 288.5 250 56.8
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 9.3e-76 288.1 250 56.4
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 1.2e-75 287.7 250 56.4
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 2.7e-75 286.6 250 56.0
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 3.5e-75 286.2 251 57.0
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 4.6e-75 285.8 250 55.6
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 6.0e-75 285.4 251 56.2
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 7.8e-75 285.0 244 57.8
CARHR081550 Cardamine hirsuta HOM05D006708 ORTHO05D008321 1.0e-74 284.6 251 56.2
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 1.7e-74 283.9 251 56.2
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 6.6e-74 282.0 250 55.6
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 3.3e-73 279.6 242 55.8
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 4.8e-72 275.8 244 57.4
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 6.2e-72 275.4 247 55.5
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 2.4e-71 273.5 260 53.8
CSS0015576 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 6.9e-71 271.9 262 55.0
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 3.5e-67 259.6 250 52.0
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 6.0e-67 258.8 205 63.4
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 1.3e-66 257.7 242 53.7
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 9.0e-63 245.0 247 51.4
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 1.9e-60 237.3 143 77.6
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 5.1e-58 229.2 144 73.6
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 6.7e-58 228.8 237 49.4
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 2.1e-56 223.8 145 71.0
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 1.3e-50 204.5 138 68.8
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 7.4e-49 198.7 238 45.0
CSS0021077 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.0e-45 188.3 250 43.6
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 8.4e-45 185.3 251 41.4
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 5.1e-42 176.0 122 66.4
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 6.7e-42 175.6 238 42.4
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 1.1e-36 158.3 230 37.8
HanXRQChr10g0278271 Helianthus annuus HOM05D006708 ORTHO05D008321 8.8e-34 148.7 179 46.9
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 9.1e-31 138.7 240 35.8
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 9.1e-31 138.7 145 46.9
Rhsim05G0000200 Rhododendron simsii HOM05D006708 ORTHO05D008321 1.7e-29 134.4 162 45.1
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 7.4e-25 119.0 223 35.4
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.2e-22 111.7 221 32.6
SEGI_02195 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.1e-19 100.9 130 43.1
PRCOL_00002295 Prasinoderma coloniale HOM05D006708 ORTHO05D008321 1.5e-12 78.2 120 37.5
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 3.6e-11 73.6 238 27.7
CiPaw.15G011200 Carya illinoinensis HOM05D005655 ORTHO05D007386 3.0e-10 70.5 232 26.3
vmacro21200 Vaccinium macrocarpon HOM05D005655 ORTHO05D007386 2.6e-09 67.4 161 31.1
Lsat_1_v5_gn_4_14320 Lactuca sativa HOM05D006708 ORTHO05D008321 5.7e-09 66.2 57 52.6
Solyc04g072140.4 Solanum lycopersicum HOM05D005655 ORTHO05D007386 2.2e-08 64.3 132 32.6
Sopen04g028310 Solanum pennellii HOM05D005655 ORTHO05D007386 2.2e-08 64.3 132 32.6
Rhsim06G0093900 Rhododendron simsii HOM05D005655 ORTHO05D007386 2.8e-08 63.9 174 29.9
CAN.G564.32 Capsicum annuum HOM05D005655 ORTHO05D007386 3.7e-08 63.5 132 31.1
Gohir.D02G067400 Gossypium hirsutum HOM05D005655 ORTHO05D007386 3.7e-08 63.5 132 34.8
Gorai.005G076300 Gossypium raimondii HOM05D005655 ORTHO05D007386 3.7e-08 63.5 132 34.8
Dinv41018 Davidia involucrata HOM05D005655 ORTHO05D007386 4.8e-08 63.2 132 33.3
CSS0031675 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 6.3e-08 62.8 131 35.1
PGSC0003DMG400031154 Solanum tuberosum HOM05D005655 ORTHO05D007386 6.3e-08 62.8 132 31.8
Nitab4.5_0000433g0050 Nicotiana tabacum HOM05D005655 ORTHO05D007386 8.3e-08 62.4 132 31.8
Peaxi162Scf00226g00219 Petunia axillaris HOM05D005655 ORTHO05D007386 8.3e-08 62.4 131 32.8
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.1e-07 62.0 117 31.6
AUR62022311 Chenopodium quinoa HOM05D005655 ORTHO05D007386 1.4e-07 61.6 132 33.3
AUR62034929 Chenopodium quinoa HOM05D005655 ORTHO05D007386 1.4e-07 61.6 132 33.3
Gohir.A02G061800 Gossypium hirsutum HOM05D005655 ORTHO05D007386 1.4e-07 61.6 132 34.1
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.8e-07 61.2 226 25.7
Hund26667 Selenicereus undatus HOM05D005655 ORTHO05D007386 1.8e-07 61.2 190 29.5
Aqoxy5G02015 Aquilegia oxysepala HOM05D005655 ORTHO05D007386 2.4e-07 60.8 131 33.6
CSS0015534 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 2.4e-07 60.8 131 34.4
HanXRQChr04g0115611 Helianthus annuus HOM05D005655 ORTHO05D007386 2.4e-07 60.8 158 30.4
Nitab4.5_0001000g0130 Nicotiana tabacum HOM05D005655 ORTHO05D007386 2.4e-07 60.8 132 31.1
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 3.1e-07 60.5 131 33.6
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 3.1e-07 60.5 100 32.0
Thecc.10G182000 Theobroma cacao HOM05D005655 ORTHO05D007386 4.1e-07 60.1 132 32.6
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 5.4e-07 59.7 95 34.7
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 5.4e-07 59.7 101 32.7
DCAR_013167 Daucus carota HOM05D005655 ORTHO05D007386 1.2e-06 58.5 166 31.3
Duzib093G0465 Durio zibethinus HOM05D005655 ORTHO05D007386 1.2e-06 58.5 132 32.6
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 1.2e-06 58.5 100 33.0
ECA247G4107 Erigeron canadensis HOM05D005655 ORTHO05D007386 2.0e-06 57.8 129 32.6
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 2.7e-06 57.4 101 33.7
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 2.7e-06 57.4 101 33.7
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 2.7e-06 57.4 240 25.0
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 4.5e-06 56.6 101 32.7
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 5.9e-06 56.2 234 25.6
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 5.9e-06 56.2 101 30.7
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 5.9e-06 56.2 101 30.7


User provided reference genes

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