Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 0.0e+00 2317.0 1278 100.0
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1114.8 1343 53.8
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 4.3e-301 1038.5 1336 51.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.1e-280 970.7 1225 50.5
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 5.1e-270 935.3 1378 47.1
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.7e-265 920.2 1355 47.3
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 9.4e-264 914.4 1338 48.4
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 1.0e-262 911.0 1363 46.0
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 6.1e-255 885.2 1353 48.1
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.3e-249 867.5 1364 45.2
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.7e-249 867.1 1364 45.4
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 8.2e-244 848.2 1361 45.7
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 2.7e-234 816.6 1365 46.0
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.0e-233 814.7 1396 41.3
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.1e-232 811.2 1216 46.1
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 9.8e-229 798.1 1410 43.8
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 4.8e-228 795.8 1406 44.0
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 4.1e-227 792.7 1355 44.5
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 4.1e-227 792.7 1445 42.2
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 9.1e-227 791.6 1388 43.3
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.3e-225 786.9 1331 42.9
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 2.9e-225 786.6 1400 43.7
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 6.6e-225 785.4 1432 44.3
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.9e-224 783.9 1379 41.7
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 1.0e-222 778.1 1362 43.6
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.3e-222 776.9 1391 42.1
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 4.0e-222 776.2 1351 43.6
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 6.8e-222 775.4 1356 42.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 3.4e-221 773.1 1322 44.6
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 4.4e-221 772.7 1199 48.6
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 7.5e-221 771.9 1402 40.7
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 9.8e-221 771.5 1145 46.3
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.7e-220 770.8 1362 42.9
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 2.2e-220 770.4 1384 42.6
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 3.7e-220 769.6 1393 42.2
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.9e-220 769.2 1389 42.5
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 4.1e-219 766.1 1394 42.8
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 7.0e-219 765.4 1362 41.8
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.0e-218 763.8 1404 41.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 3.5e-218 763.1 1399 43.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 3.9e-217 759.6 1366 43.3
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 6.6e-217 758.8 1375 42.6
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 1.2e-215 754.6 1372 43.8
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 2.8e-215 753.4 1400 42.9
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.0e-214 751.5 1351 43.6
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.3e-214 750.4 1379 43.5
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 3.1e-214 750.0 1373 42.4
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 4.4e-213 746.1 1347 42.0
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 7.5e-213 745.3 1355 41.1
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 2.2e-212 743.8 1405 42.5
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 3.7e-212 743.0 1362 42.1
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.9e-212 742.7 1155 44.5
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 2.0e-210 737.3 904 48.0
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 4.6e-210 736.1 1390 41.9
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.5e-208 731.1 1382 41.3
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.5e-208 731.1 1389 42.7
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 9.5e-208 728.4 1409 42.4
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 1.2e-207 728.0 1458 40.4
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 4.7e-207 726.1 1387 41.5
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 4.7e-207 726.1 1373 43.0
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 8.9e-206 721.8 1328 39.6
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.5e-205 721.1 1420 42.3
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.4e-205 719.9 1409 42.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.4e-205 719.9 1391 42.3
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 7.5e-205 718.8 1347 41.6
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.2e-204 717.2 1387 42.8
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 3.2e-203 713.4 1359 42.3
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 4.1e-203 713.0 1406 42.2
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 2.7e-202 710.3 1392 40.5
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.6e-201 705.7 1445 41.0
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.1e-200 704.9 1354 41.2
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 5.6e-200 702.6 1250 40.7
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.2e-199 701.4 1353 40.0
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 8.1e-199 698.7 1431 41.2
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 9.2e-195 685.3 1351 40.3
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.0e-193 680.2 1313 42.0
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.1e-191 674.1 1368 40.6
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 6.8e-190 669.1 1430 38.7
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 8.9e-190 668.7 1492 38.9
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 9.9e-189 665.2 1385 39.6
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.2e-186 658.3 1384 39.7
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.1e-184 651.7 1409 38.0
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.5e-184 651.4 1346 40.6
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 2.5e-184 650.6 1396 38.4
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.6e-183 647.9 1389 39.3
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 4.8e-183 646.4 1381 40.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 3.1e-182 643.7 1345 41.4
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.1e-179 635.2 1415 38.4
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 4.2e-179 633.3 1379 38.2
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 4.2e-179 633.3 1379 38.2
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.2e-178 631.7 1413 38.3
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.6e-178 631.3 1383 38.1
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 2.1e-178 630.9 1332 40.3
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 6.0e-178 629.4 1383 38.0
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.3e-177 628.2 1390 37.8
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 3.9e-177 626.7 1040 42.7
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 2.5e-176 624.0 1414 37.3
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.1e-174 618.6 1497 37.5
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 1.5e-173 614.8 1400 38.7
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.5e-173 613.2 1513 37.9
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 9.9e-173 612.1 1312 38.7
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 2.3e-169 600.9 1384 36.1
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 5.3e-166 589.7 1359 37.8
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 7.9e-162 575.9 1161 41.3
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 6.7e-161 572.8 1304 37.3
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.6e-159 568.2 1151 39.0
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.4e-158 564.3 1124 37.8
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.1e-155 555.4 1309 35.8
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.1e-150 537.3 1073 44.1
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.1e-150 537.0 791 44.5
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 6.9e-150 536.2 787 44.9
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.4e-147 528.5 1011 43.1
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 4.6e-146 523.5 1370 34.5
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 5.3e-142 510.0 929 39.5
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.8e-129 468.4 1003 37.6
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 2.8e-127 461.1 1359 33.9
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 8.2e-127 459.5 1164 34.8
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.0e-116 426.0 1257 32.3
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 6.3e-111 406.8 1201 32.8
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 2.2e-103 381.7 1221 33.3
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 2.2e-103 381.7 1376 32.6
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.0e-96 358.6 1375 30.7
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 9.8e-96 356.3 1272 32.2
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.0e-93 348.6 1366 31.5
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 7.5e-88 330.1 544 40.1
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 4.7e-82 310.8 928 35.3
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 7.3e-75 287.0 1206 28.8
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 6.2e-74 283.9 1361 27.3
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.0e-68 265.0 1355 30.4
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.1e-67 263.1 319 47.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.7e-61 241.9 391 38.9
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.6e-56 225.3 527 35.1
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.7e-52 210.7 1302 27.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.3e-47 196.4 303 38.6
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.7e-44 184.1 1061 26.5
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.5e-43 183.0 991 26.3
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.1e-41 176.8 878 26.2
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.4e-41 175.6 853 25.2
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.2e-40 173.3 308 38.6
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 1.3e-39 169.9 245 39.2
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.2e-38 164.9 1007 25.9
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.6e-37 162.9 254 39.0
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.0e-36 160.2 877 27.0
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.3e-36 159.8 207 45.9
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.8e-36 159.5 385 32.2
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.0e-36 158.7 218 45.4
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 6.7e-36 157.5 386 35.8
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.9e-35 156.0 196 45.4
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 2.2e-34 152.5 175 48.6
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.0e-31 143.7 663 25.8
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 2.9e-31 142.1 1055 24.5
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 2.9e-31 142.1 437 32.7
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 8.5e-31 140.6 213 44.1
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.5e-30 139.0 1002 24.2
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 5.5e-30 137.9 756 25.8
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.4e-28 133.3 378 31.5
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 5.1e-28 131.3 200 55.5
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 6.9e-25 120.9 972 24.6
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.2e-24 120.2 739 25.6
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.2e-24 120.2 211 34.6
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.1e-22 113.6 911 23.1
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 2.5e-22 112.5 591 32.0
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 1.8e-17 96.3 594 26.3
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 9.1e-17 94.0 83 53.0
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.5e-14 85.9 80 51.2
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 4.2e-14 85.1 89 52.8
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.0e-12 79.0 223 32.7
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 4.0e-12 78.6 147 40.8
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 5.2e-12 78.2 121 45.5
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 6.7e-12 77.8 133 35.3
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 2.6e-11 75.9 174 37.9
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 5.7e-11 74.7 1083 21.9
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.5e-08 65.1 189 40.2
CDE07G0363 Ceratophyllum demersum HOM05D002703 ORTHO05D002921 2.9e-07 62.4 56 55.4
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 3.8e-07 62.0 47 55.3
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 2.5e-06 59.3 51 56.9
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.5e-06 59.3 158 32.3
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.2e-06 57.8 39 64.1


User provided reference genes

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