Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1761.1 936 100.0
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1305.8 956 72.1
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1303.9 956 71.9
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1273.8 995 68.6
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 962 69.9
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1238.8 963 69.9
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1238.8 964 70.0
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 957 69.0
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1235.7 964 69.3
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1233.4 982 68.8
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 969 69.1
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1216.4 990 66.4
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1216.1 971 67.6
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1213.7 981 68.4
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1196.8 967 67.4
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1191.0 980 65.5
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1177.2 979 64.6
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1167.5 989 64.3
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1163.3 963 66.0
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1160.2 989 64.0
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1157.9 985 62.7
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1155.2 965 65.3
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1152.1 989 63.1
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1151.7 964 64.8
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1144.8 966 64.5
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1141.7 985 64.1
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1140.9 989 63.5
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1139.8 999 62.1
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1135.2 966 63.3
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1135.2 1160 56.1
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1134.0 985 62.9
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1131.7 984 63.3
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1131.7 990 62.2
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1130.2 1030 59.6
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1129.8 983 63.2
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1126.3 1040 61.8
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1125.2 970 61.8
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1124.0 1036 60.8
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1123.2 968 64.2
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1123.2 968 64.2
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1122.5 989 63.3
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1120.1 1029 60.4
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1119.4 981 62.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1117.4 977 62.9
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1116.7 979 62.1
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1115.9 1022 59.0
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1115.5 978 62.1
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1114.8 1042 59.9
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1114.0 1025 58.8
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1111.7 977 62.3
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1111.7 1017 60.7
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1107.8 966 61.4
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1107.8 966 61.4
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1107.8 990 61.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1107.8 1038 60.1
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1107.0 962 61.4
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1106.7 959 61.5
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1106.3 959 62.3
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1105.9 966 61.3
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1105.5 968 62.4
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1105.1 1064 58.6
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1105.1 973 63.4
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1104.7 957 63.5
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1101.3 1030 59.7
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1100.5 956 62.2
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1099.3 1020 58.9
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1099.0 958 61.5
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1098.6 958 61.4
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1097.4 976 61.9
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1093.6 959 61.2
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1092.4 965 61.1
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1092.0 983 61.4
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1091.6 962 61.2
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1090.9 960 61.2
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1087.0 1034 58.7
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1086.2 958 60.6
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1085.5 981 60.1
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 1.1e-309 1066.6 985 59.4
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 1.9e-306 1055.8 963 59.7
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 2.6e-303 1045.4 972 60.1
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 3.4e-303 1045.0 828 68.5
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 4.0e-296 1021.5 984 57.8
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.6e-292 1008.1 997 55.8
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 3.1e-288 995.3 993 56.3
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 2.0e-287 992.6 998 55.8
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 2.6e-287 992.3 845 64.6
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 2.9e-286 988.8 898 60.0
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.4e-285 986.5 955 59.3
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 6.2e-281 971.1 827 64.7
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 8.3e-278 960.7 881 60.7
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.6e-258 894.8 1005 51.9
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 3.3e-250 869.0 1067 47.4
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 9.6e-250 867.5 1053 48.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.1e-245 854.0 970 48.9
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.6e-239 832.8 690 65.7
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.8e-219 766.9 986 47.7
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 2.2e-217 760.0 759 56.4
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.7e-196 689.9 790 53.0
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.8e-187 660.6 604 60.3
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 4.9e-185 652.5 605 60.2
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 2.1e-180 637.1 915 44.5
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.4e-171 607.8 549 61.6
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.9e-157 560.8 955 36.0
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 3.4e-154 550.1 591 55.5
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 5.1e-150 536.2 555 58.4
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 4.3e-125 453.4 384 63.0
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.1e-123 448.7 274 81.8
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 4.9e-121 439.9 353 63.5
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 7.9e-119 432.6 958 31.9
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.9e-118 430.3 263 79.5
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.4e-115 421.8 345 62.6
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.1e-115 420.6 305 68.2
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 2.7e-111 407.5 277 74.4
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 7.7e-106 389.4 286 69.6
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 5.0e-105 386.7 940 31.3
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 7.9e-103 379.4 356 56.5
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 2.2e-97 361.3 1324 27.7
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.0e-93 348.2 347 53.0
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.7e-77 293.5 288 53.8
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 5.4e-75 287.0 168 82.1
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 2.2e-68 265.0 222 64.0
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.4e-67 260.4 208 63.9
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.1e-63 248.4 145 83.4
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-62 246.1 243 54.3
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.2e-55 220.3 144 71.5
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.4e-53 214.2 202 58.4
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.4e-51 209.1 181 62.4
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-48 199.1 129 72.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 9.5e-48 196.4 149 67.8
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.8e-45 187.2 129 68.2
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 5.4e-43 180.6 105 81.0
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 3.5e-42 177.9 161 59.6
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.7e-41 175.6 214 48.1
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 9.5e-40 169.9 98 81.6
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-36 159.5 131 64.1
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 3.2e-35 154.8 149 57.7
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 1.6e-34 152.5 122 65.6
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.7e-33 146.7 101 69.3
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 1.3e-25 122.9 202 41.1
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.3e-25 122.1 84 64.3
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 9.6e-24 116.7 85 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.4e-22 112.8 166 41.6
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.9e-19 102.4 139 46.0
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 8.1e-15 87.0 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 5.7e-08 64.3 81 46.9


User provided reference genes

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