Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.6e-150 536.2 301 100.0
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.8e-134 482.3 301 88.4
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 3.4e-132 475.3 301 83.1
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 6.4e-131 471.1 301 81.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-127 460.3 301 81.1
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.6e-127 457.2 301 83.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 9.6e-127 457.2 301 80.7
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 2.8e-126 455.7 301 77.1
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.7e-126 455.3 301 77.1
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 8.2e-126 454.1 298 83.2
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 8.2e-126 454.1 301 80.1
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.1e-125 453.8 302 78.8
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.4e-125 452.6 298 79.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 2.4e-125 452.6 298 80.2
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 9.0e-125 450.7 301 76.4
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.9e-123 445.7 302 77.2
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.1e-122 443.7 301 78.7
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.9e-122 443.0 301 80.1
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-122 441.0 304 76.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-122 441.0 304 76.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 9.3e-122 440.7 303 77.2
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 76.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 2.1e-121 439.5 300 75.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-121 439.5 302 80.1
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 75.7
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.5e-121 438.7 301 76.1
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 6.0e-121 438.0 305 79.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.0e-121 438.0 304 73.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.3e-120 436.8 302 74.5
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.8e-120 436.4 301 73.8
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 75.3
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 75.0
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 3.9e-120 435.3 306 77.8
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 8.7e-120 434.1 305 78.0
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.9e-119 433.0 306 75.2
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 2.5e-119 432.6 306 72.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.5e-119 432.6 300 80.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.5e-119 432.6 304 75.7
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 302 76.2
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.3e-119 432.2 283 79.2
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 4.3e-119 431.8 302 75.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 5.7e-119 431.4 296 76.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 5.7e-119 431.4 304 74.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 9.7e-119 430.6 304 74.0
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 9.7e-119 430.6 304 74.7
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.6e-118 429.9 304 73.0
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.6e-118 429.9 303 77.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.8e-118 429.1 302 71.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.8e-118 429.1 302 74.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.8e-118 429.1 302 74.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.8e-118 429.1 301 76.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.8e-118 429.1 300 72.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.7e-118 428.7 301 72.1
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.8e-118 428.3 303 73.9
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 6.3e-118 427.9 301 72.1
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 6.3e-118 427.9 304 77.3
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.2e-118 427.6 304 75.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 8.2e-118 427.6 304 72.4
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.1e-117 427.2 305 76.4
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.8e-117 426.4 302 77.2
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.4e-117 426.0 304 73.7
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.1e-117 425.6 304 75.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 4.1e-117 425.2 304 74.7
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 5.3e-117 424.9 301 76.4
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.3e-117 424.9 301 76.4
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.5e-116 423.3 301 74.8
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.5e-116 423.3 303 77.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.0e-116 422.9 301 77.7
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.0e-116 422.9 302 73.8
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.4e-116 422.2 304 75.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 3.4e-116 422.2 301 74.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 3.4e-116 422.2 303 73.3
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.9e-116 421.4 301 71.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 72.4
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.3e-115 420.2 303 71.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 2.2e-115 419.5 303 72.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.2e-115 419.5 303 72.3
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.2e-115 419.5 301 77.1
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.9e-115 419.1 302 72.2
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.9e-114 416.4 301 70.8
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.9e-114 416.4 306 71.9
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.9e-114 416.4 306 71.9
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.9e-114 416.4 306 71.9
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.5e-114 416.0 301 76.1
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.5e-114 416.0 301 76.1
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.5e-114 416.0 301 76.1
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.5e-114 416.0 305 74.8
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.5e-114 416.0 303 71.9
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.2e-114 415.6 301 77.4
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 3.2e-114 415.6 301 71.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 5.5e-114 414.8 301 74.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 7.2e-114 414.5 301 74.4
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.7e-113 412.5 299 70.6
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 4.6e-113 411.8 302 73.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 6.1e-113 411.4 302 74.5
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.0e-112 410.6 303 74.6
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.4e-112 410.2 303 73.9
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.3e-112 409.5 303 76.2
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.9e-112 408.7 301 70.1
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 3.9e-112 408.7 303 70.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.5e-111 406.8 303 73.9
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.5e-111 406.0 302 74.5
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 9.7e-111 404.1 301 72.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.7e-110 403.3 302 74.8
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.7e-110 403.3 301 69.8
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.6e-108 396.0 301 69.1
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.7e-107 393.3 298 70.1
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 6.1e-105 384.8 312 71.2
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.0e-104 384.0 305 66.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.9e-104 382.1 301 66.1
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.6e-103 379.4 303 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.7e-99 366.7 298 64.8
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-98 363.2 280 70.4
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.7e-97 358.6 303 68.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.5e-92 342.0 301 59.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 6.5e-91 338.2 302 57.6
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.5e-90 337.0 233 74.2
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.6e-89 333.6 323 55.4
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.4e-88 330.5 193 80.8
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.3e-80 303.1 251 71.3
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.4e-79 299.3 302 54.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 9.8e-79 297.7 193 76.7
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 8.3e-78 294.7 297 54.2
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 5.0e-75 285.4 251 61.4
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 6.3e-70 268.5 301 54.8
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 6.6e-67 258.5 134 92.5
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.0e-64 249.6 298 48.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.1e-58 231.1 274 56.9
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.8e-56 221.9 197 62.9
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.6e-52 209.1 190 66.8
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.7e-51 207.2 204 63.7
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 4.3e-50 202.6 303 43.6
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.0e-43 179.9 164 68.9
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 4.7e-41 172.6 293 40.6
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.1e-40 171.4 193 48.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.8e-40 170.6 193 52.8
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 8.9e-40 168.3 229 51.1
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 4.9e-38 162.5 104 76.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.4e-37 161.0 193 48.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 2.4e-37 160.2 111 72.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 5.8e-31 139.0 172 45.3
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.9e-30 136.7 87 74.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 6.4e-30 135.6 219 43.8
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-21 108.2 301 36.5
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.4e-21 107.8 301 36.9
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.9e-21 107.5 58 84.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.1e-21 105.5 61 80.3
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.2e-20 104.8 58 81.0
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.3e-19 101.3 99 60.6
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.8e-19 100.9 59 79.7
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-12 77.8 113 51.3
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.1e-12 77.4 67 49.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 3.9e-11 73.2 113 54.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.4e-08 63.9 80 52.5
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 5.8e-07 59.3 95 47.4
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 2.2e-06 57.4 43 67.4
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.9e-06 57.0 51 60.8


User provided reference genes

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