Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 2.5e-170 602.1 310 100.0
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.4e-125 452.6 304 76.0
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 3.2e-125 452.2 310 76.8
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.7e-124 449.1 311 75.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.5e-122 442.6 305 75.7
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 3.3e-122 442.2 311 75.2
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 4.3e-122 441.8 310 73.5
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 4.3e-122 441.8 309 74.8
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.6e-122 440.7 311 73.6
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 9.6e-122 440.7 305 75.1
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.1e-120 437.2 305 74.8
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.0e-119 433.0 305 74.4
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.4e-119 432.2 311 74.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 5.8e-119 431.4 310 74.8
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.3e-118 430.3 310 73.5
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.1e-117 427.2 316 70.3
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 3.2e-117 425.6 312 74.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 4.2e-117 425.2 312 71.2
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 7.1e-117 424.5 312 71.5
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.2e-116 423.7 311 70.7
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.7e-116 422.5 312 71.8
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 3.5e-116 422.2 316 69.0
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 6.0e-116 421.4 314 72.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 7.9e-116 421.0 315 72.4
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 2.3e-115 419.5 311 70.1
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.3e-115 419.5 311 70.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.7e-115 417.9 305 73.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.1e-114 417.2 312 69.6
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.5e-114 416.8 316 68.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-114 416.8 311 70.1
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-114 416.8 305 70.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.9e-114 416.4 316 70.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.3e-114 415.2 312 72.8
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.6e-114 414.8 312 72.4
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 5.6e-114 414.8 312 72.4
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 7.4e-114 414.5 321 68.5
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.3e-113 413.7 312 69.9
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.1e-113 412.9 310 71.0
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.1e-113 412.9 313 70.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.1e-113 412.9 313 70.6
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.1e-113 412.9 309 71.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.8e-113 412.5 317 71.0
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 2.8e-113 412.5 306 71.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 3.7e-113 412.1 310 71.3
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 6.2e-113 411.4 310 69.7
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.4e-112 410.2 313 70.6
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.4e-112 409.5 320 66.9
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.4e-112 409.5 307 70.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.4e-112 409.5 311 68.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 2.4e-112 409.5 304 71.7
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.0e-112 408.7 311 70.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 4.0e-112 408.7 305 69.5
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 6.9e-112 407.9 305 71.1
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 9.0e-112 407.5 304 71.1
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.2e-111 407.1 312 70.8
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.5e-111 406.8 317 68.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 7.6e-111 404.4 306 72.2
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 7.6e-111 404.4 306 72.2
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.0e-110 404.1 304 70.4
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.0e-110 404.1 306 70.6
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.7e-110 403.3 304 70.4
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.7e-110 403.3 315 69.5
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.7e-110 403.3 311 67.5
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.2e-110 402.9 315 68.3
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 3.8e-110 402.1 311 69.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 6.5e-110 401.4 353 63.2
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 6.5e-110 401.4 304 70.1
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 8.4e-110 401.0 317 69.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.1e-109 400.6 316 67.4
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.9e-109 399.8 316 68.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 2.5e-109 399.4 304 70.4
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 2.5e-109 399.4 315 69.8
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 5.5e-109 398.3 304 69.7
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 7.1e-109 397.9 304 69.4
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 7.1e-109 397.9 304 69.4
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.2e-108 397.1 346 61.8
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.7e-108 396.0 307 69.7
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.7e-108 396.0 305 69.2
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 3.5e-108 395.6 310 68.7
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 4.6e-108 395.2 305 69.2
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 4.6e-108 395.2 305 69.2
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 4.6e-108 395.2 305 69.2
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 2.3e-107 392.9 304 68.4
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.3e-107 392.9 317 66.9
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.3e-107 392.9 314 67.5
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.3e-107 392.9 312 66.3
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.1e-107 391.7 307 68.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.1e-106 390.6 310 67.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.5e-106 389.4 313 67.1
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.5e-106 389.4 308 66.9
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 5.7e-106 388.3 335 63.0
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 5.7e-106 388.3 321 66.4
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 7.4e-106 387.9 273 76.9
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.8e-105 386.0 306 68.3
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 8.5e-102 374.4 348 58.9
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.9e-101 373.2 316 64.2
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.2e-101 372.5 221 85.5
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.2e-100 370.5 304 67.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.2e-100 370.5 352 58.2
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.3e-99 366.3 286 68.9
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 5.7e-98 361.7 332 60.2
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.4e-96 356.3 275 70.2
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 9.1e-96 354.4 260 71.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.0e-94 350.9 275 71.3
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.2e-93 345.5 286 66.8
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 6.1e-92 341.7 315 58.4
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-90 337.0 203 82.3
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.8e-88 330.1 306 57.2
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.9e-88 328.2 266 64.3
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.0e-87 326.6 265 66.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.6e-87 326.2 211 78.7
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.5e-86 321.2 310 61.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 9.7e-82 307.8 310 56.8
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.3e-81 307.4 305 57.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.2e-81 306.6 220 71.4
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.4e-80 303.1 304 55.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 8.5e-78 294.7 185 80.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.6e-68 262.7 181 76.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 8.3e-65 251.5 412 42.2
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 7.0e-64 248.4 289 53.3
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 9.1e-64 248.1 392 42.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.6e-63 247.3 231 62.8
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.2e-58 231.1 192 70.8
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-49 201.1 183 60.1
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.8e-47 191.8 305 43.3
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 3.0e-46 189.9 231 45.5
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 9.5e-45 184.9 117 81.2
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 5.8e-42 175.6 273 41.4
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 7.8e-39 165.2 187 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 3.9e-38 162.9 204 46.1
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-37 161.4 133 66.9
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.8e-35 154.1 94 83.0
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.2e-34 151.4 95 84.2
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.2e-34 151.4 249 44.6
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.9e-34 148.3 122 67.2
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.3e-33 145.2 126 61.1
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.3e-33 145.2 126 61.1
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.3e-30 137.9 92 78.3
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 5.1e-30 136.0 190 43.2
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.0e-27 126.3 80 80.0
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 5.8e-26 122.5 230 42.2
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 4.6e-23 112.8 139 48.9
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.0e-22 110.2 99 62.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.4e-16 91.3 62 77.4
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.5e-15 86.7 116 48.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.9e-09 66.2 40 72.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.1e-07 60.8 43 67.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 6.0e-07 59.3 62 56.5
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.7e-06 55.8 33 72.7


User provided reference genes

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