Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.2e-132 476.5 235 100.0
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 7.1e-93 344.4 238 76.5
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.6e-92 343.2 235 74.0
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.6e-92 343.2 234 75.2
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 5.1e-91 338.2 222 77.0
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.1e-90 337.0 238 75.6
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 7.4e-90 334.3 242 71.9
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 7.4e-90 334.3 244 71.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 7.4e-90 334.3 183 89.6
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.8e-89 331.6 184 89.7
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 6.2e-89 331.3 184 88.0
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.4e-88 329.3 243 72.8
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.4e-88 329.3 235 73.2
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 5.3e-88 328.2 235 73.6
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 6.9e-88 327.8 235 73.2
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 9.0e-88 327.4 225 74.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.2e-87 327.0 236 72.9
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.5e-87 326.6 202 82.2
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.6e-87 325.9 236 71.6
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.8e-87 324.7 184 84.2
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 7.6e-87 324.3 235 70.2
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 7.6e-87 324.3 186 83.9
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.3e-86 323.6 236 71.6
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.3e-86 323.6 183 86.3
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 2.2e-86 322.8 191 81.7
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 2.2e-86 322.8 235 70.2
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.9e-86 322.4 192 83.3
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 3.8e-86 322.0 182 86.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 6.4e-86 321.2 182 84.1
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 8.4e-86 320.9 238 71.0
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 8.4e-86 320.9 238 71.0
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.1e-85 320.5 200 79.0
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 241 70.5
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.4e-85 320.1 203 78.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-85 320.1 237 70.9
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 188 85.1
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.9e-85 319.7 182 85.2
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.9e-85 319.7 186 84.4
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 2.4e-85 319.3 220 73.2
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.4e-85 319.3 243 70.0
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.2e-85 318.9 233 71.2
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 3.2e-85 318.9 214 74.8
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 4.2e-85 318.5 241 69.3
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 4.2e-85 318.5 179 84.9
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 5.5e-85 318.2 185 84.3
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 7.1e-85 317.8 233 72.1
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 7.1e-85 317.8 191 81.7
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 7.1e-85 317.8 186 83.3
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 9.3e-85 317.4 184 83.2
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 9.3e-85 317.4 241 69.7
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-84 316.6 239 69.0
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.6e-84 316.6 235 68.5
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.6e-84 316.6 186 83.3
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.6e-84 316.6 244 68.9
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 2.1e-84 316.2 186 82.8
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.1e-84 316.2 182 83.5
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 3.5e-84 315.5 220 73.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 6.0e-84 314.7 241 68.9
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 7.9e-84 314.3 241 69.3
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 7.9e-84 314.3 182 83.5
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 7.9e-84 314.3 181 85.1
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.0e-83 313.9 211 75.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.0e-83 313.9 192 80.7
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.3e-83 313.5 181 86.2
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.8e-83 313.2 184 84.2
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.8e-83 313.2 234 69.2
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.8e-83 313.2 181 83.4
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 1.8e-83 313.2 181 82.9
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.3e-83 312.8 183 84.2
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 2.3e-83 312.8 183 84.2
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-83 312.8 184 83.7
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.3e-83 312.8 184 83.7
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.3e-83 312.8 184 83.2
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 3.0e-83 312.4 202 77.2
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.9e-83 312.0 180 83.3
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 5.1e-83 311.6 179 83.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.1e-83 311.6 179 83.2
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.1e-83 311.6 179 83.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.1e-83 311.6 239 66.9
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 6.7e-83 311.2 184 83.2
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 6.7e-83 311.2 193 80.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.7e-83 311.2 179 83.2
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 6.7e-83 311.2 241 68.5
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 8.7e-83 310.8 181 83.4
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.9e-82 309.7 189 80.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.9e-82 309.7 179 82.7
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.3e-82 308.9 185 81.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.3e-82 308.9 181 82.3
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 4.3e-82 308.5 167 86.8
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.3e-82 308.5 218 72.0
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 5.6e-82 308.1 200 77.0
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.6e-81 306.6 176 84.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.6e-81 306.6 183 82.0
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.1e-81 306.2 185 80.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 4.8e-81 305.1 257 64.2
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 6.2e-81 304.7 185 77.8
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.4e-80 303.5 185 79.5
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.8e-80 303.1 184 80.4
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.4e-80 302.8 186 80.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 9.0e-80 300.8 182 80.2
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 9.0e-80 300.8 170 86.5
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.2e-79 300.4 184 80.4
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 2.6e-79 299.3 170 84.7
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.7e-78 296.6 182 79.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.7e-78 296.6 165 85.5
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-77 293.5 191 77.5
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.4e-77 293.5 170 80.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 5.7e-74 281.6 181 73.5
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 7.4e-74 281.2 164 82.9
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 2.4e-72 276.2 242 63.2
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.5e-69 266.2 235 61.7
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 9.3e-69 264.2 152 83.6
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 4.6e-68 261.9 194 65.5
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.5e-66 256.9 159 70.4
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.9e-66 256.5 182 73.6
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.3e-65 253.8 188 71.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.4e-64 249.6 179 70.4
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.2e-63 247.3 183 68.9
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.0e-62 244.2 200 61.0
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.7e-57 225.7 215 58.6
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 2.0e-55 219.9 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.3e-49 200.7 136 72.8
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.2e-46 189.9 113 81.4
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 6.5e-46 188.3 152 64.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.3e-43 179.9 105 77.1
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 4.4e-42 175.6 160 61.2
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 7.5e-42 174.9 112 78.6
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 8.2e-41 171.4 101 80.2
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.1e-40 169.1 104 80.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 5.3e-40 168.7 104 79.8
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.5e-31 139.0 124 58.9
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.7e-30 137.1 82 84.1
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.8e-30 136.0 109 65.1
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 5.5e-29 132.1 78 84.6
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 9.5e-29 131.3 153 39.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.6e-28 129.4 75 86.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.8e-27 124.8 74 87.8
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.5e-21 107.5 77 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.5e-18 97.4 63 68.3
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.8e-16 90.5 92 57.6
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-14 83.6 49 81.6
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 4.4e-10 69.3 54 57.4
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 4.9e-09 65.9 47 63.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.2e-08 63.2 42 71.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3


User provided reference genes

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