Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.1e-174 615.5 299 100.0
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.5e-84 317.0 268 60.4
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.4e-84 315.8 251 61.8
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.9e-84 315.1 251 61.8
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.2e-82 308.9 268 59.0
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.7e-81 306.2 263 59.3
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.4e-80 303.9 268 58.6
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 3.9e-80 302.4 268 56.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.9e-80 302.4 268 58.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 8.8e-80 301.2 268 58.2
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.1e-79 300.8 268 56.7
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 3.3e-79 299.3 272 58.8
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.7e-79 298.5 268 57.8
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 9.7e-79 297.7 268 57.5
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.7e-78 297.0 268 57.5
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.2e-78 296.6 268 56.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.8e-78 296.2 268 57.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.8e-78 296.2 268 56.3
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.7e-78 295.8 268 56.0
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.7e-78 295.8 268 57.1
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.8e-78 295.4 268 56.3
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 4.8e-78 295.4 275 56.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 6.3e-78 295.0 268 56.7
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 8.2e-78 294.7 268 56.7
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.1e-77 294.3 268 56.7
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.4e-77 293.9 268 57.5
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.4e-77 293.1 268 56.0
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.4e-77 293.1 268 56.3
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.1e-77 292.7 268 56.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.1e-77 292.7 268 55.6
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.1e-77 292.4 287 55.1
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 4.1e-77 292.4 275 56.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 5.3e-77 292.0 268 56.7
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 5.3e-77 292.0 268 55.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 7.0e-77 291.6 268 56.0
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 7.0e-77 291.6 261 57.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 9.1e-77 291.2 259 57.1
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 9.1e-77 291.2 268 55.2
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 9.1e-77 291.2 268 57.1
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.2e-76 290.8 269 56.1
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.5e-76 290.4 211 66.8
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.0e-76 290.0 271 55.4
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.0e-76 290.0 268 56.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.0e-76 290.0 268 55.6
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.6e-76 289.7 268 54.5
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.5e-76 289.3 268 56.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.5e-76 289.3 267 55.8
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.5e-76 288.9 268 55.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-76 288.9 268 55.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 4.5e-76 288.9 267 55.8
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 5.9e-76 288.5 268 55.2
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.9e-76 288.5 258 57.4
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 7.7e-76 288.1 268 55.6
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.0e-75 287.7 268 54.9
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.0e-75 287.7 268 53.7
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.7e-75 287.0 268 54.5
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-75 286.6 268 55.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.2e-75 286.6 268 55.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.9e-75 286.2 268 54.5
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.9e-75 286.2 268 54.1
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 5.0e-75 285.4 268 55.2
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.0e-75 285.4 268 55.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.0e-75 285.4 268 56.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.0e-75 285.4 268 56.3
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.0e-75 285.4 268 56.7
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 6.5e-75 285.0 225 60.9
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 8.5e-75 284.6 268 55.2
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 8.5e-75 284.6 268 54.1
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.4e-74 283.9 259 56.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.4e-74 283.9 269 54.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-74 283.9 268 54.5
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.9e-74 283.5 271 54.6
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.9e-74 283.5 258 55.8
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.5e-74 283.1 269 55.8
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.2e-74 282.7 269 54.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.5e-74 282.0 270 54.4
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 5.5e-74 282.0 259 55.2
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 5.5e-74 282.0 261 55.2
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 5.5e-74 282.0 268 55.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 7.2e-74 281.6 269 54.3
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.2e-73 280.8 268 54.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 2.7e-73 279.6 271 54.2
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 3.6e-73 279.3 268 54.5
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 4.7e-73 278.9 262 54.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.8e-72 276.9 269 53.2
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.8e-72 276.9 269 53.2
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.0e-72 276.2 308 47.7
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.9e-72 275.8 269 52.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 6.7e-72 275.0 269 52.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 6.7e-72 275.0 269 52.8
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 8.8e-72 274.6 269 52.8
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 8.8e-72 274.6 228 58.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.8e-72 274.6 268 52.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 8.8e-72 274.6 267 53.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.5e-71 273.9 228 57.9
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 7.4e-71 271.6 269 51.3
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.3e-70 270.8 268 52.2
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.2e-70 270.0 297 50.2
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.8e-70 269.6 268 53.0
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 4.8e-70 268.9 284 51.1
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.3e-70 268.5 268 52.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.2e-70 268.1 228 59.6
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 7.0e-69 265.0 265 54.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.5e-68 262.7 271 49.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.5e-68 262.7 268 51.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 3.5e-68 262.7 227 59.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-68 262.3 269 49.1
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 7.7e-68 261.5 211 58.8
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.3e-67 260.8 245 56.3
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.7e-67 260.4 268 51.1
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.2e-67 260.0 265 53.2
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.9e-66 256.9 261 52.1
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.9e-66 256.9 262 50.8
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 3.2e-66 256.1 239 56.9
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 7.2e-66 255.0 228 55.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.1e-65 253.4 268 49.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 4.7e-65 252.3 264 53.4
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.4e-63 245.7 228 53.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 9.7e-63 244.6 269 48.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.2e-62 243.4 270 47.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 4.8e-62 242.3 234 52.6
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 8.2e-62 241.5 273 47.6
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.1e-61 239.2 251 51.8
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.7e-60 236.5 293 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 8.5e-59 231.5 268 47.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.5e-58 229.9 199 59.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.0e-56 222.6 268 45.1
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 7.5e-55 218.4 200 55.0
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.1e-53 214.5 271 47.2
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 6.8e-48 195.3 179 53.6
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.8e-48 195.3 188 50.5
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.7e-47 192.2 192 49.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.7e-46 190.7 194 50.5
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 7.8e-44 181.8 163 55.8
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 9.8e-39 164.9 188 44.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.7e-36 156.8 135 57.0
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 6.6e-35 152.1 119 60.5
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.0e-23 114.0 108 56.5
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.4e-23 113.2 163 44.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 7.1e-21 105.5 72 58.3
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 6.0e-20 102.4 121 46.3
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 9.9e-15 85.1 58 67.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.4e-13 81.3 56 67.9
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.0e-11 73.6 77 46.8
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 3.9e-11 73.2 45 71.1
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.8e-09 67.0 47 63.8
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 4.0e-08 63.2 80 46.2
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.0e-08 63.2 47 55.3
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 4.4e-07 59.7 72 48.6


User provided reference genes

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