Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9754 Utricularia gibba HOM05D001601 ORTHO05D002628 1.2e-163 579.7 289 100.0
MSTRG.16976 Avicennia marina HOM05D001601 ORTHO05D002628 1.5e-47 194.1 312 44.9
Oeu015561.1 Olea europaea HOM05D001601 ORTHO05D002628 2.9e-40 169.9 244 46.7
Cc04_g12140 Coffea canephora HOM05D001601 ORTHO05D002628 4.4e-36 156.0 326 35.0
Dinv14116 Davidia involucrata HOM05D001601 ORTHO05D002628 4.1e-34 149.4 306 37.6
CSS0003134 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 2.8e-30 136.7 310 35.2
GSVIVG01013720001 Vitis vinifera HOM05D001601 ORTHO05D002628 8.9e-29 131.7 306 36.9
Potri.009G136300 Populus trichocarpa HOM05D001601 ORTHO05D002628 2.0e-28 130.6 314 34.1
Sabra09G0105900 Salix brachista HOM05D001601 ORTHO05D002628 2.0e-28 130.6 310 33.9
SGA_v2.0_scaffold124G33644 Striga asiatica HOM05D001601 ORTHO05D002628 5.8e-28 129.0 295 37.3
Manes.04G072000 Manihot esculenta HOM05D001601 ORTHO05D002628 2.9e-27 126.7 326 33.7
CSS0000255 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 2.4e-26 123.6 255 37.3
QL11p050977 Quercus lobata HOM05D001601 ORTHO05D002628 4.1e-26 122.9 344 33.4
TWI31G0590 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 1.2e-25 121.3 307 33.6
Cfa005256 Carpinus fangiana HOM05D001601 ORTHO05D002628 3.5e-25 119.8 274 37.6
Hma1.2p1_0032F.1_g019320 Hydrangea macrophylla HOM05D001601 ORTHO05D002628 6.0e-25 119.0 260 36.5
COL.COLO4_17355 Corchorus olitorius HOM05D001601 ORTHO05D002628 1.3e-24 117.9 272 35.7
Solyc08g062780.2 Solanum lycopersicum HOM05D001601 ORTHO05D002628 1.3e-24 117.9 318 31.8
THA.LOC104819650 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 3.0e-24 116.7 260 34.2
Prupe.8G166800 Prunus persica HOM05D001601 ORTHO05D002628 5.1e-24 115.9 336 32.4
Rhsim05G0054200 Rhododendron simsii HOM05D001601 ORTHO05D002628 5.1e-24 115.9 247 33.6
Sopen08g018260 Solanum pennellii HOM05D001601 ORTHO05D002628 8.6e-24 115.2 318 31.8
Thecc.02G058200 Theobroma cacao HOM05D001601 ORTHO05D002628 1.5e-23 114.4 327 33.3
Lalb_Chr02g0143431 Lupinus albus HOM05D001601 ORTHO05D002628 1.9e-23 114.0 264 33.3
Medtr1g112680 Medicago truncatula HOM05D001601 ORTHO05D002628 2.5e-23 113.6 300 32.3
CsaV3_5G026500 Cucumis sativus L. HOM05D001601 ORTHO05D002628 3.3e-23 113.2 288 32.6
Sed0019722 Sechium edule HOM05D001601 ORTHO05D002628 4.3e-23 112.8 326 32.5
MELO3C021653.2 Cucumis melo HOM05D001601 ORTHO05D002628 5.6e-23 112.5 340 30.3
TPR.G2429 Trifolium pratense HOM05D001601 ORTHO05D002628 5.6e-23 112.5 313 32.6
CiPaw.06G121200 Carya illinoinensis HOM05D001601 ORTHO05D002628 7.3e-23 112.1 340 30.9
Duzib132G1094 Durio zibethinus HOM05D001601 ORTHO05D002628 7.3e-23 112.1 325 32.3
CAN.G432.3 Capsicum annuum HOM05D001601 ORTHO05D002628 9.5e-23 111.7 317 30.0
Ciclev10030105m.g Citrus clementina HOM05D001601 ORTHO05D002628 1.2e-22 111.3 319 31.3
TAR381G1205 Trochodendron aralioides HOM05D001601 ORTHO05D002628 2.8e-22 110.2 283 35.0
Lj5g0000172 Lotus japonicus HOM05D001601 ORTHO05D002628 3.6e-22 109.8 269 34.2
ClCG02G004010 Citrullus lanatus HOM05D001601 ORTHO05D002628 1.1e-21 108.2 362 31.5
Psat6g232480 Pisum sativum HOM05D001601 ORTHO05D002628 1.1e-21 108.2 327 31.8
Glyma.10G281800 Glycine max HOM05D001601 ORTHO05D002628 1.8e-21 107.5 323 33.1
CANSAT25G3111 Cannabis sativa HOM05D001601 ORTHO05D002628 3.1e-21 106.7 332 31.6
VMungo0720G1541 Vigna mungo HOM05D001601 ORTHO05D002628 3.1e-21 106.7 317 34.4
AL3G49670 Arabidopsis lyrata HOM05D001601 ORTHO05D002628 4.0e-21 106.3 254 36.2
Gorai.008G036900 Gossypium raimondii HOM05D001601 ORTHO05D002628 6.8e-21 105.5 330 30.6
TWI75G1106 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 6.8e-21 105.5 252 38.5
ECA234G0339 Erigeron canadensis HOM05D001601 ORTHO05D002628 8.9e-21 105.1 277 32.9
Gohir.D12G035600 Gossypium hirsutum HOM05D001601 ORTHO05D002628 1.5e-20 104.4 327 30.0
Lsat_1_v5_gn_4_71800 Lactuca sativa HOM05D001601 ORTHO05D002628 1.5e-20 104.4 335 31.0
THA.LOC104819656 Tarenaya hassleriana HOM05D001601 ORTHO05D002628 1.5e-20 104.4 257 34.6
Gohir.A12G036800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 2.6e-20 103.6 327 30.0
GSVIVG01024008001 Vitis vinifera HOM05D001601 ORTHO05D002628 2.6e-20 103.6 251 36.7
Aa31LG8G14100 Aethionema arabicum HOM05D001601 ORTHO05D002628 3.4e-20 103.2 317 33.4
FvH4_2g15470 Fragaria vesca HOM05D001601 ORTHO05D002628 5.8e-20 102.4 343 30.9
FAN24G0324 Fragaria x ananassa HOM05D001601 ORTHO05D002628 5.8e-20 102.4 343 30.9
AT2G16910 Arabidopsis thaliana HOM05D001601 ORTHO05D002628 7.6e-20 102.1 254 35.8
BraA03t13741Z Brassica rapa HOM05D001601 ORTHO05D002628 9.9e-20 101.7 307 32.6
FvH4_2g15460 Fragaria vesca HOM05D001601 ORTHO05D002628 9.9e-20 101.7 243 37.9
Carub.0003s3072 Capsella rubella HOM05D001601 ORTHO05D002628 2.2e-19 100.5 307 31.9
Sc14g0002300 Simmondsia chinensis HOM05D001601 ORTHO05D002628 2.2e-19 100.5 297 30.6
AUR62010034 Chenopodium quinoa HOM05D001601 ORTHO05D002628 6.4e-19 99.0 309 31.1
A07p04210 Brassica napus HOM05D001601 ORTHO05D002628 8.3e-19 98.6 308 33.1
RcHm_v2.0_Chr6g0278441 Rosa chinensis HOM05D001601 ORTHO05D002628 1.1e-18 98.2 242 36.8
Thhalv10022620m.g Eutrema salsugineum HOM05D001601 ORTHO05D002628 1.4e-18 97.8 257 36.2
A03p46130 Brassica napus HOM05D001601 ORTHO05D002628 1.9e-18 97.4 266 33.5
CARHR107200 Cardamine hirsuta HOM05D001601 ORTHO05D002628 1.9e-18 97.4 255 35.3
FAN20G1511 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.9e-18 97.4 344 30.2
Peaxi162Scf00070g00045 Petunia axillaris HOM05D001601 ORTHO05D002628 1.9e-18 97.4 253 31.6
BraA07t28212Z Brassica rapa HOM05D001601 ORTHO05D002628 3.2e-18 96.7 308 32.8
FAN15G2735 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.2e-18 96.7 344 30.2
BcaB03g16426 Brassica carinata HOM05D001601 ORTHO05D002628 4.1e-18 96.3 260 34.6
Aqoxy2G01591 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 5.4e-18 95.9 279 34.1
BcaB08g34676 Brassica carinata HOM05D001601 ORTHO05D002628 9.2e-18 95.1 255 34.5
BcaC06g36193 Brassica carinata HOM05D001601 ORTHO05D002628 9.2e-18 95.1 307 32.6
C07p06690 Brassica napus HOM05D001601 ORTHO05D002628 9.2e-18 95.1 307 32.6
BolC7t41091H Brassica oleracea HOM05D001601 ORTHO05D002628 9.2e-18 95.1 307 32.6
EL10Ac9g21368 Beta vulgaris HOM05D001601 ORTHO05D002628 1.6e-17 94.4 328 30.8
BcaC01g02972 Brassica carinata HOM05D001601 ORTHO05D002628 1.6e-17 94.4 255 34.1
C03p57610 Brassica napus HOM05D001601 ORTHO05D002628 1.6e-17 94.4 254 35.0
BolC3t18036H Brassica oleracea HOM05D001601 ORTHO05D002628 1.6e-17 94.4 255 34.1
RcHm_v2.0_Chr6g0278471 Rosa chinensis HOM05D001601 ORTHO05D002628 1.6e-17 94.4 345 30.7
Migut.B01188 Erythranthe guttata HOM05D001601 ORTHO05D002628 3.5e-17 93.2 182 42.9
Eucgr.G01783 Eucalyptus grandis HOM05D001601 ORTHO05D002628 3.5e-17 93.2 306 32.4
arahy.Tifrunner.gnm1.ann1.W4LCKL Arachis hypogaea HOM05D001601 ORTHO05D002628 4.6e-17 92.8 295 30.5
MD05G1122900 Malus domestica HOM05D001601 ORTHO05D002628 6.0e-17 92.4 332 31.6
arahy.Tifrunner.gnm1.ann1.GJBP3C Arachis hypogaea HOM05D001601 ORTHO05D002628 1.3e-16 91.3 269 31.6
AUR62013022 Chenopodium quinoa HOM05D001601 ORTHO05D002628 2.3e-16 90.5 312 28.5
Prupe.8G166900 Prunus persica HOM05D001601 ORTHO05D002628 3.0e-16 90.1 288 30.6
PGR042G3640 Punica granatum HOM05D001601 ORTHO05D002628 3.0e-16 90.1 254 32.7
Sp3g30190 Schrenkiella parvula HOM05D001601 ORTHO05D002628 8.6e-16 88.6 253 34.4
CDE02G0907 Ceratophyllum demersum HOM05D001601 ORTHO05D002628 1.1e-15 88.2 296 28.4
Nitab4.5_0003730g0030 Nicotiana tabacum HOM05D001601 ORTHO05D002628 2.1e-14 84.0 261 32.2
Atru.chr5.3376 Acer truncatum HOM05D001601 ORTHO05D002628 2.8e-14 83.6 355 31.0
Haze_02127 Corylus avellana HOM05D001601 ORTHO05D002628 2.8e-14 83.6 275 32.4
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.1e-13 80.1 306 28.8
Cpa.g.sc20.95 Carica papaya HOM05D001601 ORTHO05D002628 6.8e-13 79.0 301 30.2
Nitab4.5_0024162g0010 Nicotiana tabacum HOM05D001601 ORTHO05D002628 6.8e-13 79.0 220 32.3
Rhsim12G0118200 Rhododendron simsii HOM05D000812 ORTHO05D000672 1.2e-12 78.2 245 27.8
CiPaw.05G083200 Carya illinoinensis HOM05D001601 ORTHO05D002628 1.5e-12 77.8 285 28.1
PSO700G0026 Papaver somniferum HOM05D001601 ORTHO05D002628 2.0e-12 77.4 350 28.0
Glyma.20G107532 Glycine max HOM05D001601 ORTHO05D002628 3.4e-12 76.6 121 39.7
DCAR_004707 Daucus carota HOM05D001601 ORTHO05D002628 2.2e-11 73.9 264 28.8
DCAR_004708 Daucus carota HOM05D001601 ORTHO05D002628 2.2e-11 73.9 264 28.8
Dinv24842 Davidia involucrata HOM05D000812 ORTHO05D002628 2.2e-11 73.9 294 27.6
TAR622G1239 Trochodendron aralioides HOM05D001601 ORTHO05D002628 3.8e-11 73.2 287 26.5
MELO3C011994.2 Cucumis melo HOM05D001601 ORTHO05D002628 4.9e-11 72.8 233 29.6
Gohir.A12G143000 Gossypium hirsutum HOM05D001601 ORTHO05D002628 4.9e-11 72.8 234 25.6
Lj9A394T44 Lonicera japonica HOM05D001601 ORTHO05D002628 1.4e-10 71.2 69 49.3
SEGI_08844 Sequoiadendron giganteum HOM05D001601 ORTHO05D002628 1.9e-10 70.9 263 30.8
Aqoxy4G02705 Aquilegia oxysepala HOM05D001601 ORTHO05D002628 2.4e-10 70.5 282 29.4
Gorai.008G159000 Gossypium raimondii HOM05D001601 ORTHO05D002628 2.4e-10 70.5 232 27.2
Sc11g0001150 Simmondsia chinensis HOM05D001601 ORTHO05D002628 2.4e-10 70.5 245 31.8
ClCG05G025360 Citrullus lanatus HOM05D001601 ORTHO05D002628 3.2e-10 70.1 246 27.6
Gohir.D12G147800 Gossypium hirsutum HOM05D001601 ORTHO05D002628 3.2e-10 70.1 246 26.8
Prupe.1G252600 Prunus persica HOM05D001601 ORTHO05D002628 3.2e-10 70.1 242 29.3
Duzib268G1820 Durio zibethinus HOM05D001601 ORTHO05D002628 4.2e-10 69.7 237 27.8
PSO170G4243 Papaver somniferum HOM05D001601 ORTHO05D002628 1.6e-09 67.8 361 27.4
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 2.1e-09 67.4 232 28.0
HanXRQChr03g0071131 Helianthus annuus HOM05D001601 ORTHO05D002628 2.1e-09 67.4 331 26.6
QL03p060111 Quercus lobata HOM05D001601 ORTHO05D002628 2.1e-09 67.4 235 26.8
Sed0004702 Sechium edule HOM05D001601 ORTHO05D002628 2.7e-09 67.0 235 28.1
SMO266G0108 Selaginella moellendorffii HOM05D001601 ORTHO05D002628 2.7e-09 67.0 264 28.8
MD16G1093900 Malus domestica HOM05D001601 ORTHO05D002628 6.0e-09 65.9 237 27.8
Rhsim05G0054400 Rhododendron simsii HOM05D001601 ORTHO05D002628 6.0e-09 65.9 289 26.6
Cpa.g.sc20.94 Carica papaya HOM05D001601 ORTHO05D002628 1.7e-08 64.3 215 29.3
Atru.chr11.2042 Acer truncatum HOM05D001601 ORTHO05D002628 2.3e-08 63.9 70 42.9
COL.COLO4_24178 Corchorus olitorius HOM05D001601 ORTHO05D002628 2.3e-08 63.9 258 26.4
PGR119G0515 Punica granatum HOM05D001601 ORTHO05D002628 2.3e-08 63.9 288 23.6
Hund05998 Selenicereus undatus HOM05D001601 ORTHO05D002628 2.3e-08 63.9 78 41.0
Gohir.A05G314400 Gossypium hirsutum HOM05D001601 ORTHO05D002628 6.6e-08 62.4 236 31.8
TWI75G0278 Tripterygium wilfordii HOM05D001601 ORTHO05D002628 1.1e-07 61.6 246 24.4
TAR629G2382 Trochodendron aralioides HOM05D001601 ORTHO05D002628 1.5e-07 61.2 238 27.7
Lsat_1_v5_gn_3_27360 Lactuca sativa HOM05D001601 ORTHO05D002628 1.9e-07 60.8 114 31.6
Solyc05g005300.2 Solanum lycopersicum HOM05D001601 ORTHO05D002628 2.5e-07 60.5 247 25.9
Sopen05g001310 Solanum pennellii HOM05D001601 ORTHO05D002628 2.5e-07 60.5 247 25.9
Phvul.007G019000 Phaseolus vulgaris HOM05D001601 ORTHO05D002628 3.3e-07 60.1 204 32.4
arahy.Tifrunner.gnm1.ann1.BX85EM Arachis hypogaea HOM05D001601 ORTHO05D002628 4.3e-07 59.7 264 27.3
arahy.Tifrunner.gnm1.ann1.JV7126 Arachis hypogaea HOM05D001601 ORTHO05D002628 4.3e-07 59.7 264 27.3
AUR62005387 Chenopodium quinoa HOM05D001601 ORTHO05D002628 5.6e-07 59.3 237 28.7
DCAR_007086 Daucus carota HOM05D001601 ORTHO05D002628 5.6e-07 59.3 262 26.7
FAN12G3943 Fragaria x ananassa HOM05D001601 ORTHO05D002628 5.6e-07 59.3 78 41.0
RcHm_v2.0_Chr4g0443741 Rosa chinensis HOM05D001601 ORTHO05D002628 5.6e-07 59.3 71 39.4
FvH4_4g34320 Fragaria vesca HOM05D001601 ORTHO05D002628 7.3e-07 58.9 68 44.1
MD05G1123000 Malus domestica HOM05D001601 ORTHO05D002628 7.3e-07 58.9 218 32.1
Oeu015560.1 Olea europaea HOM05D001601 ORTHO05D002628 7.3e-07 58.9 59 62.7
HPP92_012948 Vanilla planifolia HOM05D001601 ORTHO05D002628 7.3e-07 58.9 252 30.6
FAN07G1274 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.3e-06 58.2 63 46.0
Haze_12188 Corylus avellana HOM05D001601 ORTHO05D002628 1.6e-06 57.8 237 24.5
Oeu057821.1 Olea europaea HOM05D001601 ORTHO05D002628 1.6e-06 57.8 239 28.5
CSS0039169 Camellia sinensis var. sinensis HOM05D001601 ORTHO05D002628 2.1e-06 57.4 236 25.8
Lj4g0008008 Lotus japonicus HOM05D001601 ORTHO05D002628 2.1e-06 57.4 239 25.9
Psat4g124280 Pisum sativum HOM05D001601 ORTHO05D002628 3.6e-06 56.6 248 26.6
CAN.G1731.6 Capsicum annuum HOM05D001601 ORTHO05D002628 4.8e-06 56.2 237 25.3
Cfa009154 Carpinus fangiana HOM05D001601 ORTHO05D002628 4.8e-06 56.2 236 23.7
Medtr8g064700 Medicago truncatula HOM05D001601 ORTHO05D002628 4.8e-06 56.2 105 31.4
ECA246G1144 Erigeron canadensis HOM05D001601 ORTHO05D002628 8.1e-06 55.5 81 33.3
Lj3A1054T81 Lonicera japonica HOM05D001601 ORTHO05D002628 8.1e-06 55.5 247 26.3
Nitab4.5_0001483g0050 Nicotiana tabacum HOM05D001601 ORTHO05D002628 8.1e-06 55.5 261 26.8
TPR.G7110 Trifolium pratense HOM05D001601 ORTHO05D002628 8.1e-06 55.5 141 26.2


User provided reference genes

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