Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 1.1e-207 726.5 378 100.0
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 4.0e-170 601.7 375 83.2
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 8.8e-170 600.5 378 83.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.7e-168 595.1 381 82.2
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.3e-165 585.9 356 84.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 8.0e-163 577.4 358 82.4
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 4.4e-161 571.6 375 79.2
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.1e-156 557.0 377 77.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.1e-156 557.0 399 75.2
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.6e-156 554.7 376 76.9
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-155 553.5 367 78.2
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.0e-154 550.4 358 78.2
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.4e-154 550.1 363 78.8
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.4e-154 550.1 365 77.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.8e-154 549.7 358 77.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.3e-154 549.3 358 77.7
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 8.9e-154 547.4 376 75.5
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 4.4e-153 545.0 326 84.0
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 4.4e-153 545.0 339 82.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 5.8e-153 544.7 358 77.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.7e-152 543.1 358 76.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.9e-152 542.3 375 75.2
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.4e-152 541.2 382 75.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.4e-151 540.0 350 77.7
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.9e-151 539.7 324 84.0
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.9e-151 539.7 355 78.3
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.9e-151 539.7 324 84.3
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.2e-151 538.9 384 75.0
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.2e-151 538.9 376 75.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.2e-151 538.9 355 78.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 5.4e-151 538.1 363 77.7
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 7.0e-151 537.7 353 77.9
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 9.2e-151 537.3 381 74.3
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.0e-150 536.2 356 79.2
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.7e-150 535.8 337 80.4
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.6e-150 535.0 354 78.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 6.0e-150 534.6 357 78.2
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.0e-149 533.9 356 79.2
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.0e-149 533.9 325 83.1
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.7e-149 533.1 357 77.9
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.9e-149 531.9 366 74.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.9e-149 531.9 366 74.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.0e-149 531.6 328 81.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 8.6e-149 530.8 381 74.8
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.1e-148 530.4 351 77.8
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.9e-148 529.6 353 77.1
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.9e-148 529.6 368 75.8
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.3e-148 528.9 323 83.6
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 4.3e-148 528.5 349 78.5
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 4.3e-148 528.5 333 80.5
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 5.6e-148 528.1 379 73.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 5.6e-148 528.1 328 80.8
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 5.6e-148 528.1 358 76.8
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 7.3e-148 527.7 379 72.8
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 7.3e-148 527.7 352 77.8
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 7.3e-148 527.7 359 77.7
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 7.3e-148 527.7 373 75.3
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.2e-147 526.9 324 81.8
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.6e-147 526.6 356 76.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.8e-147 525.8 385 71.2
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 4.7e-147 525.0 331 81.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.2e-147 524.6 352 77.3
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.2e-147 524.6 355 76.3
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 8.1e-147 524.2 352 77.3
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 8.1e-147 524.2 353 75.9
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 8.1e-147 524.2 353 75.9
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 1.4e-146 523.5 385 74.8
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.4e-146 523.5 331 81.0
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.4e-146 523.5 331 80.7
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.3e-146 522.7 385 72.5
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.3e-146 522.7 351 76.1
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.3e-146 522.7 353 77.3
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 4.0e-146 521.9 334 79.9
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.0e-146 521.9 343 78.7
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 8.9e-146 520.8 385 71.7
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 8.9e-146 520.8 365 75.9
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.5e-145 520.0 385 72.2
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.5e-145 520.0 354 76.0
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.5e-145 520.0 334 79.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.0e-145 519.6 352 77.0
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 2.6e-145 519.2 332 80.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 2.6e-145 519.2 381 72.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.4e-145 518.8 367 75.2
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.4e-145 518.5 370 74.6
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 7.5e-145 517.7 352 76.7
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 2.9e-144 515.8 366 74.3
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.7e-144 515.4 366 74.6
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 3.7e-144 515.4 385 70.6
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 6.4e-144 514.6 370 74.3
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 6.4e-144 514.6 376 71.8
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-143 513.5 323 79.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-143 513.1 361 74.0
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-143 513.1 361 74.2
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.9e-143 513.1 361 74.0
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.2e-143 512.3 370 74.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.2e-143 512.3 370 74.1
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 4.1e-143 511.9 381 71.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 4.1e-143 511.9 373 73.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.1e-143 511.9 360 74.7
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 9.2e-143 510.8 385 71.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 9.2e-143 510.8 376 71.5
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.2e-143 510.8 376 71.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 9.2e-143 510.8 361 74.0
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-142 510.4 381 71.4
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.1e-142 509.6 361 74.2
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.1e-142 509.6 317 81.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-142 509.6 323 78.9
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 2.7e-142 509.2 342 77.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.6e-142 508.4 370 73.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.6e-142 508.4 370 73.2
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 6.0e-142 508.1 467 61.2
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.0e-141 507.3 366 73.5
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.3e-141 506.9 381 71.1
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-141 506.9 359 73.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.7e-141 506.5 352 74.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.7e-141 506.5 357 74.2
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.3e-141 506.1 328 78.0
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-141 506.1 349 75.1
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 5.1e-141 505.0 349 74.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 8.6e-141 504.2 373 70.2
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.9e-140 503.1 349 74.5
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.5e-140 502.7 301 82.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.5e-140 500.7 351 75.2
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-138 496.5 300 81.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.8e-138 496.5 372 69.4
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.8e-138 494.6 324 77.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.9e-138 494.2 375 69.6
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.9e-138 494.2 375 69.6
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.6e-137 492.7 372 68.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 4.4e-137 491.9 283 85.5
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 4.4e-137 491.9 323 77.4
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.7e-136 490.0 385 68.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.4e-135 486.1 372 69.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 5.4e-135 485.0 322 74.8
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 4.6e-134 481.9 330 74.2
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.0e-134 481.5 313 78.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 9.6e-132 474.2 346 71.1
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.6e-131 472.2 323 73.4
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.7e-131 471.9 283 82.7
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.4e-130 470.3 361 69.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 9.9e-129 464.2 381 67.2
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.7e-128 463.4 348 72.1
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.9e-128 462.6 336 72.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 8.4e-128 461.1 333 70.9
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 8.4e-128 461.1 299 76.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.0e-125 452.6 300 75.0
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-124 448.7 297 77.8
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.0e-113 413.3 329 66.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 6.4e-112 408.3 261 82.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 3.7e-107 392.5 309 65.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.8e-106 390.2 250 79.6
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 8.2e-99 364.8 229 81.2
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.0e-96 357.8 290 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 7.4e-92 341.7 228 77.6
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.2e-73 281.2 270 59.6
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.6e-70 269.6 308 51.0
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 2.3e-69 266.9 204 70.1
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.8e-67 259.2 379 44.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.4e-66 257.7 216 65.7
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 5.6e-47 192.6 113 79.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 9.8e-44 181.8 113 79.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.1e-39 168.3 172 59.3
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.1e-39 168.3 172 59.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.1e-39 168.3 172 59.3
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.0e-32 145.2 104 68.3
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.3e-32 144.8 298 34.2
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.9e-31 141.0 102 68.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.9e-31 141.0 102 68.6
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.2e-30 138.3 102 67.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 2.8e-30 137.1 98 68.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 3.6e-30 136.7 106 65.1
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.2e-28 131.7 107 60.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.7e-27 127.9 106 60.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.1e-18 96.7 64 73.4
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.5e-15 87.4 49 85.7
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.3e-15 87.0 61 75.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.3e-15 87.0 67 68.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 3.9e-08 63.5 38 71.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.1e-07 62.0 66 51.5


User provided reference genes

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