Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_0.g1482 Utricularia gibba HOM05D003901 ORTHO05D004511 1.0e-94 350.1 184 100.0
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 1.0e-30 137.5 156 49.4
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 1.5e-29 133.7 148 51.4
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 1.6e-28 130.2 150 50.0
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 2.4e-27 126.3 162 48.8
SalBow6G4040 Salvia bowleyana HOM05D003901 ORTHO05D004511 6.9e-27 124.8 149 50.3
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 1.2e-26 124.0 157 46.5
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 2.6e-26 122.9 163 44.2
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 1.7e-25 120.2 150 49.3
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 5.0e-25 118.6 159 45.9
Cc03_g06690 Coffea canephora HOM05D003901 ORTHO05D004511 5.0e-25 118.6 159 45.9
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 5.0e-25 118.6 160 46.9
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 6.5e-25 118.2 159 45.9
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.1e-24 117.5 160 46.2
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 2.5e-24 116.3 165 44.8
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 5.5e-24 115.2 160 47.5
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 7.2e-24 114.8 157 47.1
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 7.2e-24 114.8 157 43.9
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.6e-23 113.6 160 45.0
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.6e-23 113.6 160 45.0
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.6e-23 113.6 164 45.1
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 1.6e-23 113.6 164 45.1
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 2.1e-23 113.2 164 42.7
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 2.1e-23 113.2 164 42.7
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 3.6e-23 112.5 170 45.9
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 3.6e-23 112.5 170 45.9
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 3.6e-23 112.5 164 42.7
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 3.6e-23 112.5 164 45.7
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 3.6e-23 112.5 159 43.4
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 7.9e-23 111.3 156 44.2
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 7.9e-23 111.3 157 44.6
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 7.9e-23 111.3 164 43.3
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 1.8e-22 110.2 164 44.5
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 1.8e-22 110.2 172 42.4
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 1.8e-22 110.2 164 43.3
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 2.3e-22 109.8 164 43.3
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 2.3e-22 109.8 182 41.2
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 2.3e-22 109.8 159 42.8
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 3.9e-22 109.0 156 44.2
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.9e-22 109.0 156 43.6
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 5.1e-22 108.6 160 45.0
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 5.1e-22 108.6 166 43.4
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 6.7e-22 108.2 159 42.8
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 6.7e-22 108.2 160 41.9
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 6.7e-22 108.2 170 42.9
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 6.7e-22 108.2 157 44.6
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 8.8e-22 107.8 164 45.1
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 1.5e-21 107.1 156 45.5
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 1.5e-21 107.1 159 42.1
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 1.5e-21 107.1 157 43.9
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.0e-21 106.7 156 43.6
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 2.0e-21 106.7 159 41.5
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 2.5e-21 106.3 162 44.4
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 2.5e-21 106.3 161 44.1
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.3e-21 105.9 156 42.3
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 3.3e-21 105.9 159 45.3
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 4.3e-21 105.5 164 44.5
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 4.3e-21 105.5 160 44.4
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 4.3e-21 105.5 156 42.9
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 5.7e-21 105.1 164 43.9
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 5.7e-21 105.1 166 43.4
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 5.7e-21 105.1 160 44.4
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 7.4e-21 104.8 156 42.9
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 7.4e-21 104.8 181 42.5
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 7.4e-21 104.8 154 45.5
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 1.7e-20 103.6 192 39.1
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 2.8e-20 102.8 162 43.8
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 2.8e-20 102.8 163 43.6
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 3.7e-20 102.4 178 42.1
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 4.8e-20 102.1 156 42.9
FAN25G0520 Fragaria x ananassa HOM05D003901 ORTHO05D004511 6.3e-20 101.7 157 42.0
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 6.3e-20 101.7 162 41.4
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 6.3e-20 101.7 164 39.0
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 1.1e-19 100.9 169 42.0
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 1.1e-19 100.9 163 42.9
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 1.4e-19 100.5 168 41.7
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 1.4e-19 100.5 156 43.6
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 1.8e-19 100.1 186 38.7
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 5.3e-19 98.6 160 43.1
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 5.3e-19 98.6 160 43.1
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 6.9e-19 98.2 149 43.6
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 9.1e-19 97.8 169 40.2
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 1.2e-18 97.4 163 43.6
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.5e-18 97.1 158 39.2
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 1.5e-18 97.1 168 39.9
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 2.6e-18 96.3 152 41.4
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.0e-17 94.4 158 37.3
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.0e-17 94.4 158 37.3
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 1.0e-17 94.4 160 43.8
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.3e-17 94.0 169 39.6
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 2.2e-17 93.2 181 38.1
Gohir.D08G014900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 2.2e-17 93.2 182 40.1
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 2.9e-17 92.8 182 39.6
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 6.5e-17 91.7 169 39.1
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 8.5e-17 91.3 164 39.6
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 1.9e-16 90.1 164 38.4
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 1.9e-16 90.1 151 40.4
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 2.5e-16 89.7 159 40.9
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 3.2e-16 89.4 169 41.4
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 5.5e-16 88.6 146 41.8
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 7.2e-16 88.2 165 41.2
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 7.2e-16 88.2 156 41.0
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 7.2e-16 88.2 147 43.5
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 9.4e-16 87.8 214 32.7
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 2.1e-15 86.7 158 41.8
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 3.6e-15 85.9 163 40.5
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 4.7e-15 85.5 163 39.3
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 4.7e-15 85.5 163 39.3
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 7.9e-15 84.7 187 36.9
Cpa.g.sc1624.1 Carica papaya HOM05D003901 ORTHO05D004511 1.0e-14 84.3 132 47.0
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 1.0e-14 84.3 154 40.9
TPR.G23813 Trifolium pratense HOM05D003901 ORTHO05D004511 1.8e-14 83.6 160 39.4
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 3.9e-14 82.4 158 38.0
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 6.7e-14 81.6 162 40.1
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 1.1e-13 80.9 153 39.9
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 1.5e-13 80.5 160 39.4
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 2.0e-13 80.1 156 40.4
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 2.0e-13 80.1 156 40.4
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 2.0e-13 80.1 156 40.4
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 2.0e-13 80.1 158 37.3
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 2.0e-13 80.1 147 41.5
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 3.3e-13 79.3 161 40.4
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 5.7e-13 78.6 160 34.4
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 7.4e-13 78.2 179 35.8
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 1.3e-12 77.4 159 39.0
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 6.3e-12 75.1 179 34.6
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 5.3e-11 72.0 168 35.7
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 7.0e-11 71.6 158 39.9
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.6e-10 70.5 160 33.1
Actinidia24200 Actinidia chinensis HOM05D003901 ORTHO05D004511 4.5e-10 68.9 148 36.5
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 7.7e-10 68.2 133 40.6
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 1.0e-09 67.8 165 36.4
Lsat_1_v5_gn_2_133321 Lactuca sativa HOM05D003901 ORTHO05D004511 1.2e-07 60.8 157 35.7
Sp5g16720 Schrenkiella parvula HOM05D003901 ORTHO05D004511 1.8e-06 57.0 72 51.4


User provided reference genes

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