Gene: Sopen11g026900

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g026900
  • Transcript Identifier Sopen11g026900.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 62714606-62723284 : negative

Gene Family Information

  • ID HOM05D003901
  • #Genes/#Species 178/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g026900.1

Descriptions

  • Description Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2. | homolog of histone chaperone HIRA (HIRA) | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , TUP1-like enhancer of split , WD40 repeat, conserved site , WD40 repeat , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein ., WD40/YVTN repeat-like-containing domain, Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006325
IEA
InterProchromatin organization
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0031935
ISO
PLAZA Integrative Orthologyregulation of chromatin silencing AT3G44530
GO:0045814
ISO
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic AT3G44530
GO:0006334
ISO
PLAZA Integrative Orthologynucleosome assembly AT3G44530

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G44530
GO:0030875
ISO
PLAZA Integrative OrthologyrDNA protrusion AT3G44530

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR031120 WD repeat HIR1
IPR036322 WD40-repeat-containing domain superfamily
IPR011494 TUP1-like enhancer of split
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
12.2.3.1 Chromatin organisation.histone chaperone activities.HIRA histone chaperone complex.component HIRA