Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z5SY86 Arachis hypogaea HOM05D002125 ORTHO05D002105 6.1e-61 237.3 118 100.0
VMungo0331G0572 Vigna mungo HOM05D002125 ORTHO05D002105 4.6e-32 141.4 122 63.1
TPR.G5266 Trifolium pratense HOM05D002125 ORTHO05D002105 3.9e-31 138.3 122 62.3
Lalb_Chr12g0207441 Lupinus albus HOM05D002125 ORTHO05D002105 1.5e-30 136.3 122 60.7
Lj3g0018906 Lotus japonicus HOM05D002125 ORTHO05D002105 2.5e-30 135.6 122 61.5
Ca_20368_v3 Cicer arietinum L. HOM05D002125 ORTHO05D002105 4.3e-30 134.8 122 60.7
TPR.G5280 Trifolium pratense HOM05D002125 ORTHO05D002105 4.3e-30 134.8 122 60.7
Lalb_Chr07g0190871 Lupinus albus HOM05D002125 ORTHO05D002105 5.6e-30 134.4 122 59.0
Atru.chr8.2351 Acer truncatum HOM05D002125 ORTHO05D002105 2.1e-29 132.5 123 57.7
MD04G1167900 Malus domestica HOM05D002125 ORTHO05D002105 6.2e-29 131.0 122 59.0
Haze_21098 Corylus avellana HOM05D002125 ORTHO05D002105 1.4e-28 129.8 122 56.6
COL.COLO4_14438 Corchorus olitorius HOM05D002125 ORTHO05D002105 2.4e-28 129.0 123 56.1
Dinv35421 Davidia involucrata HOM05D002125 ORTHO05D002105 3.1e-28 128.6 121 57.9
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 4.0e-28 128.3 122 57.4
FvH4_6g10500 Fragaria vesca HOM05D002125 ORTHO05D002105 8.9e-28 127.1 123 56.9
FAN09G3322 Fragaria x ananassa HOM05D002125 ORTHO05D002105 8.9e-28 127.1 123 56.9
FAN14G4647 Fragaria x ananassa HOM05D002125 ORTHO05D002105 8.9e-28 127.1 123 56.9
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 1.5e-27 126.3 119 58.8
arahy.Tifrunner.gnm1.ann1.W9TR1A Arachis hypogaea HOM05D002125 ORTHO05D002105 2.0e-27 125.9 106 67.0
arahy.Tifrunner.gnm1.ann1.WL5YV9 Arachis hypogaea HOM05D002125 ORTHO05D002105 2.0e-27 125.9 106 67.0
FAN05G3214 Fragaria x ananassa HOM05D002125 ORTHO05D002105 2.6e-27 125.6 123 56.1
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 4.4e-27 124.8 121 57.0
Thecc.05G005500 Theobroma cacao HOM05D002125 ORTHO05D002105 4.4e-27 124.8 123 55.3
Psat7g249400 Pisum sativum HOM05D002125 ORTHO05D002105 5.8e-27 124.4 116 60.3
CSS0021162 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 9.9e-27 123.6 122 55.7
RcHm_v2.0_Chr3g0461461 Rosa chinensis HOM05D002125 ORTHO05D002105 9.9e-27 123.6 120 57.5
vmacro20333 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 1.3e-26 123.2 122 55.7
HanXRQChr16g0511061 Helianthus annuus HOM05D002125 ORTHO05D002105 1.7e-26 122.9 121 56.2
MSTRG.5534 Avicennia marina HOM05D002125 ORTHO05D002105 2.2e-26 122.5 121 53.7
FAN05G3110 Fragaria x ananassa HOM05D002125 ORTHO05D002105 2.2e-26 122.5 123 55.3
Lj3A945T19 Lonicera japonica HOM05D002125 ORTHO05D002105 2.2e-26 122.5 121 53.7
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 2.2e-26 122.5 120 57.5
Duzib093G1543 Durio zibethinus HOM05D002125 ORTHO05D002105 3.8e-26 121.7 123 54.5
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 4.9e-26 121.3 121 53.7
Duzib106G1864 Durio zibethinus HOM05D002125 ORTHO05D002105 4.9e-26 121.3 123 53.7
FAN02G2848 Fragaria x ananassa HOM05D002125 ORTHO05D002105 4.9e-26 121.3 120 56.7
Gohir.D01G220201 Gossypium hirsutum HOM05D002125 ORTHO05D002105 4.9e-26 121.3 123 52.8
Medtr4g013255 Medicago truncatula HOM05D002125 ORTHO05D002105 4.9e-26 121.3 116 57.8
QL07p033676 Quercus lobata HOM05D002125 ORTHO05D002105 4.9e-26 121.3 122 54.9
ECA236G3892 Erigeron canadensis HOM05D002125 ORTHO05D002105 8.4e-26 120.6 121 53.7
Migut.J00087 Erythranthe guttata HOM05D002125 ORTHO05D002105 8.4e-26 120.6 120 55.0
Gohir.A01G230200 Gossypium hirsutum HOM05D002125 ORTHO05D002105 1.4e-25 119.8 123 52.0
Manes.09G112800 Manihot esculenta HOM05D002125 ORTHO05D002105 1.4e-25 119.8 123 54.5
CSS0015901 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 2.4e-25 119.0 122 53.3
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 2.4e-25 119.0 122 53.3
Gorai.002G266900 Gossypium raimondii HOM05D002125 ORTHO05D002105 3.2e-25 118.6 123 52.0
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 4.2e-25 118.2 129 51.9
Phvul.010G062400 Phaseolus vulgaris HOM05D002125 ORTHO05D002105 5.4e-25 117.9 109 60.6
Lsat_1_v5_gn_8_103981 Lactuca sativa HOM05D002125 ORTHO05D002105 1.2e-24 116.7 121 53.7
Rhsim04G0124000 Rhododendron simsii HOM05D002125 ORTHO05D002105 1.2e-24 116.7 121 54.5
SGA_v2.0_scaffold85G26673 Striga asiatica HOM05D002125 ORTHO05D002105 1.2e-24 116.7 120 55.0
TWI77G1029 Tripterygium wilfordii HOM05D002125 ORTHO05D002105 1.2e-24 116.7 122 54.1
Nitab4.5_0000355g0180 Nicotiana tabacum HOM05D002125 ORTHO05D002105 2.1e-24 115.9 120 52.5
Potri.016G128400 Populus trichocarpa HOM05D002125 ORTHO05D002105 2.7e-24 115.5 121 54.5
SalBow4G2763 Salvia bowleyana HOM05D002125 ORTHO05D002105 2.7e-24 115.5 121 52.1
Potri.006G105400 Populus trichocarpa HOM05D002125 ORTHO05D002105 3.5e-24 115.2 121 55.4
Solyc10g076290.2 Solanum lycopersicum HOM05D002125 ORTHO05D002105 3.5e-24 115.2 89 64.0
Sopen10g027910 Solanum pennellii HOM05D002125 ORTHO05D002105 3.5e-24 115.2 89 64.0
Ciclev10011244m.g Citrus clementina HOM05D002125 ORTHO05D002105 4.6e-24 114.8 122 52.5
Glyma.01G128200 Glycine max HOM05D002125 ORTHO05D002105 4.6e-24 114.8 108 59.3
PGSC0003DMG400011864 Solanum tuberosum HOM05D002125 ORTHO05D002105 4.6e-24 114.8 89 62.9
Glyma.03G042600 Glycine max HOM05D002125 ORTHO05D002105 6.0e-24 114.4 108 59.3
Sabra16G0130000 Salix brachista HOM05D002125 ORTHO05D002105 1.0e-23 113.6 121 52.1
TAR369G0073 Trochodendron aralioides HOM05D002125 ORTHO05D002105 1.0e-23 113.6 120 50.8
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 3.0e-23 112.1 90 61.1
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 3.0e-23 112.1 117 53.8
EL10As8g23828 Beta vulgaris HOM05D002125 ORTHO05D002105 3.9e-23 111.7 90 61.1
MELO3C009128.2 Cucumis melo HOM05D002125 ORTHO05D002105 5.1e-23 111.3 122 51.6
Sed0004912 Sechium edule HOM05D002125 ORTHO05D002105 5.1e-23 111.3 122 52.5
CANSAT35G0731 Cannabis sativa HOM05D002125 ORTHO05D002105 6.6e-23 110.9 122 49.2
ClCG10G022490 Citrullus lanatus HOM05D002125 ORTHO05D002105 8.7e-23 110.5 122 50.8
Peaxi162Scf00264g00860 Petunia axillaris HOM05D002125 ORTHO05D002105 1.1e-22 110.2 124 50.8
Eucgr.K02937 Eucalyptus grandis HOM05D002125 ORTHO05D002105 1.5e-22 109.8 110 56.4
Hund19853 Selenicereus undatus HOM05D002125 ORTHO05D002105 2.5e-22 109.0 90 61.1
DCAR_015355 Daucus carota HOM05D002125 ORTHO05D002105 4.3e-22 108.2 120 51.7
AUR62026344 Chenopodium quinoa HOM05D002125 ORTHO05D002105 7.3e-22 107.5 90 58.9
Hund03802 Selenicereus undatus HOM05D002125 ORTHO05D002105 1.4e-20 103.2 90 56.7
Hma1.2p1_0501F.1_g167270 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 2.4e-20 102.4 111 52.3
Hma1.2p1_2488F.1_g323150 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 2.4e-20 102.4 111 52.3
Hma1.2p1_2488F.1_g323155 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 2.4e-20 102.4 111 52.3
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 4.0e-20 101.7 150 42.7
COL.COLO4_11166 Corchorus olitorius HOM05D002125 ORTHO05D002105 5.3e-20 101.3 75 65.3
CSS0007269 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 1.2e-19 100.1 75 65.3
Sed0011152 Sechium edule HOM05D002125 ORTHO05D002105 2.0e-19 99.4 75 64.0
CiPaw.09G216100 Carya illinoinensis HOM05D002125 ORTHO05D002105 7.6e-19 97.4 115 49.6
Cc00_g13900 Coffea canephora HOM05D002125 ORTHO05D002105 1.3e-18 96.7 108 52.8
Oeu023749.1 Olea europaea HOM05D002125 ORTHO05D002105 1.3e-18 96.7 66 74.2
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 2.9e-18 95.5 75 62.7
Zm00001eb094050 Zea mays HOM05D002125 ORTHO05D002105 3.8e-18 95.1 75 58.7
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 4.9e-18 94.7 98 53.1
TAR623G1068 Trochodendron aralioides HOM05D002125 ORTHO05D002105 4.9e-18 94.7 78 61.5
Aa31LG1G23340 Aethionema arabicum HOM05D002125 ORTHO05D002105 3.2e-17 92.0 114 45.6
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 3.2e-17 92.0 75 62.7
Dinv28702 Davidia involucrata HOM05D002125 ORTHO05D002105 1.2e-16 90.1 75 62.7
Duzib168G1340 Durio zibethinus HOM05D002125 ORTHO05D002105 2.1e-16 89.4 69 65.2
AUR62006299 Chenopodium quinoa HOM05D002125 ORTHO05D002105 2.7e-16 89.0 75 58.7
Nn2g13283 Nelumbo nucifera HOM05D002125 ORTHO05D002105 4.6e-16 88.2 62 72.6
CARHR212080 Cardamine hirsuta HOM05D002125 ORTHO05D002105 6.0e-16 87.8 113 43.4
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 7.9e-16 87.4 90 48.9
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 7.9e-16 87.4 90 48.9
Sabra19G0122000 Salix brachista HOM05D002125 ORTHO05D002105 1.8e-15 86.3 65 66.2
Sabra19G0132300 Salix brachista HOM05D002125 ORTHO05D002105 1.8e-15 86.3 65 66.2
MBI15_g03640_MAGBIO Magnolia biondii HOM05D002125 ORTHO05D002105 3.9e-15 85.1 65 67.7
Carub.0006s0011 Capsella rubella HOM05D002125 ORTHO05D002105 1.1e-14 83.6 109 43.1
Potri.019G123400 Populus trichocarpa HOM05D002125 ORTHO05D002105 1.1e-14 83.6 65 64.6
Gohir.D03G143500 Gossypium hirsutum HOM05D002125 ORTHO05D002105 1.9e-14 82.8 65 66.2
Gorai.003G150800 Gossypium raimondii HOM05D002125 ORTHO05D002105 1.9e-14 82.8 65 66.2
Manes.18G145100 Manihot esculenta HOM05D002125 ORTHO05D002105 1.9e-14 82.8 65 63.1
CiPaw.13G068100 Carya illinoinensis HOM05D002125 ORTHO05D002105 2.5e-14 82.4 66 65.2
Hund05045 Selenicereus undatus HOM05D002125 ORTHO05D002105 2.5e-14 82.4 75 57.3
AL6G10330 Arabidopsis lyrata HOM05D002125 ORTHO05D002105 3.3e-14 82.0 109 44.0
Dinv09681 Davidia involucrata HOM05D002125 ORTHO05D002105 5.6e-14 81.3 60 70.0
DCAR_018662 Daucus carota HOM05D002125 ORTHO05D002105 7.4e-14 80.9 99 49.5
Zm00001eb163310 Zea mays HOM05D002125 ORTHO05D002105 9.6e-14 80.5 65 60.0
GSVIVG01024623001 Vitis vinifera HOM05D002125 ORTHO05D002105 1.3e-13 80.1 75 57.3
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 1.6e-13 79.7 62 66.1
AT5G01720 Arabidopsis thaliana HOM05D002125 ORTHO05D002105 2.1e-13 79.3 109 42.2
Cfa017102 Carpinus fangiana HOM05D002125 ORTHO05D002105 2.1e-13 79.3 55 72.7
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 2.1e-13 79.3 116 43.1
Gohir.A03G025000 Gossypium hirsutum HOM05D002125 ORTHO05D002105 2.1e-13 79.3 60 68.3
Sc21g0004980 Simmondsia chinensis HOM05D002125 ORTHO05D002105 2.1e-13 79.3 60 68.3
Prupe.6G286100 Prunus persica HOM05D002125 ORTHO05D002105 4.8e-13 78.2 164 34.1
THA.LOC104816175 Tarenaya hassleriana HOM05D002125 ORTHO05D002105 6.2e-13 77.8 120 38.3
Thhalv10012898m.g Eutrema salsugineum HOM05D002125 ORTHO05D002105 1.1e-12 77.0 112 40.2
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 1.4e-12 76.6 81 46.9
Ciclev10000539m.g Citrus clementina HOM05D002125 ORTHO05D002105 1.8e-12 76.3 61 63.9
Sp6g40980 Schrenkiella parvula HOM05D002125 ORTHO05D002105 1.8e-12 76.3 109 42.2
HPP92_015582 Vanilla planifolia HOM05D002125 ORTHO05D002105 4.0e-12 75.1 56 69.6
Peaxi162Scf00744g00225 Petunia axillaris HOM05D002125 ORTHO05D002105 5.3e-12 74.7 99 46.5
A03p00120 Brassica napus HOM05D002125 ORTHO05D002105 6.9e-12 74.3 117 38.5
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 6.9e-12 74.3 117 38.5
AUR62036234 Chenopodium quinoa HOM05D002125 ORTHO05D002105 6.9e-12 74.3 74 54.1
BcaB01g06250 Brassica carinata HOM05D002125 ORTHO05D002105 1.5e-11 73.2 117 40.2
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 1.5e-11 73.2 60 61.7
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 3.4e-11 72.0 62 64.5
FAN21G0056 Fragaria x ananassa HOM05D002125 ORTHO05D002105 5.8e-11 71.2 52 69.2
FAN25G2295 Fragaria x ananassa HOM05D002125 ORTHO05D002105 5.8e-11 71.2 52 69.2
FvH4_3g39860 Fragaria vesca HOM05D002125 ORTHO05D002105 1.7e-10 69.7 52 67.3
FAN11G3761 Fragaria x ananassa HOM05D002125 ORTHO05D002105 1.7e-10 69.7 52 67.3
FAN16G2220 Fragaria x ananassa HOM05D002125 ORTHO05D002105 1.7e-10 69.7 52 67.3
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 2.2e-10 69.3 53 67.9
RcHm_v2.0_Chr5g0071821 Rosa chinensis HOM05D002125 ORTHO05D002105 2.2e-10 69.3 52 67.3
Prupe.6G046600 Prunus persica HOM05D002125 ORTHO05D002105 6.4e-10 67.8 51 68.6
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 1.9e-09 66.2 62 58.1
MD11G1060100 Malus domestica HOM05D002125 ORTHO05D002105 7.1e-09 64.3 66 53.0
Cc01_g14960 Coffea canephora HOM05D002125 ORTHO05D002105 9.3e-09 63.9 56 58.9
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 1.6e-08 63.2 96 41.7
Phvul.008G251200 Phaseolus vulgaris HOM05D002125 ORTHO05D002105 1.6e-08 63.2 55 61.8
THA.LOC104799383 Tarenaya hassleriana HOM05D002125 ORTHO05D002105 2.1e-08 62.8 55 58.2
Cpa.g.sc2.343 Carica papaya HOM05D002125 ORTHO05D002105 6.0e-08 61.2 52 59.6
Actinidia32548 Actinidia chinensis HOM05D002125 ORTHO05D002105 1.3e-07 60.1 46 60.9
PSO017G2695 Papaver somniferum HOM05D002125 ORTHO05D002105 2.3e-07 59.3 50 62.0
Lj1g0004366 Lotus japonicus HOM05D002125 ORTHO05D002105 6.7e-07 57.8 73 45.2
Oeu050024.1 Olea europaea HOM05D002125 ORTHO05D002105 6.7e-07 57.8 65 50.8
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 8.7e-07 57.4 50 62.0
ATR0693G098 Amborella trichopoda HOM05D002125 ORTHO05D002105 1.5e-06 56.6 75 41.3
EL10Ac7g15876 Beta vulgaris HOM05D002125 ORTHO05D002105 3.3e-06 55.5 52 55.8
QL03p019441 Quercus lobata HOM05D002125 ORTHO05D002105 5.6e-06 54.7 67 43.3
Zm00001eb165480 Zea mays HOM05D002125 ORTHO05D002105 5.6e-06 54.7 77 40.3
Aa31LG11G9640 Aethionema arabicum HOM05D002125 ORTHO05D002105 7.4e-06 54.3 67 46.3
ATR0594G089 Amborella trichopoda HOM05D002125 ORTHO05D002105 7.4e-06 54.3 49 55.1
Nitab4.5_0003497g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 7.4e-06 54.3 76 40.8


User provided reference genes

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