Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 3.7e-230 801.2 412 100.0
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 7.0e-229 797.0 412 97.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 3.9e-211 738.0 413 89.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 3.9e-211 738.0 413 90.1
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.9e-211 738.0 412 90.5
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.9e-210 735.7 409 90.2
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 6.2e-209 730.7 411 90.8
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.4e-208 729.6 413 88.1
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.4e-208 729.6 414 88.9
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 3.1e-208 728.4 411 88.1
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 3.1e-208 728.4 413 88.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 6.8e-208 727.2 413 88.9
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 6.8e-208 727.2 412 88.6
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 4.4e-207 724.5 409 88.5
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.7e-206 722.6 414 89.1
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 4.9e-206 721.1 413 87.2
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.9e-205 719.2 413 88.4
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.4e-205 718.8 416 87.3
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.4e-205 718.8 413 88.4
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 4.1e-205 718.0 412 90.0
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 7.1e-205 717.2 412 88.8
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 7.1e-205 717.2 413 87.9
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.2e-204 716.5 413 87.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.6e-204 716.1 415 87.7
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.1e-204 715.7 428 85.5
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 4.6e-204 714.5 417 86.6
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.0e-203 713.4 411 89.5
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.0e-203 713.4 413 86.9
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.3e-203 712.2 413 87.4
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 5.1e-203 711.1 413 87.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.6e-203 710.7 416 86.3
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.1e-202 709.9 416 86.3
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.5e-202 709.5 414 87.2
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.9e-202 709.1 413 86.2
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 3.3e-202 708.4 420 86.0
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.3e-202 708.0 421 86.7
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 4.3e-202 708.0 412 86.4
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.6e-202 707.6 411 87.6
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.6e-202 707.6 417 86.3
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.1e-201 705.7 411 87.3
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.1e-201 705.7 411 87.3
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.7e-201 704.5 413 86.7
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 6.2e-201 704.1 412 86.7
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 8.1e-201 703.7 411 87.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 8.1e-201 703.7 414 88.9
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.4e-200 703.0 413 86.7
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.8e-200 702.6 413 86.4
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 4.0e-200 701.4 422 84.6
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 5.2e-200 701.0 415 85.8
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.8e-200 700.7 422 84.1
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 8.9e-200 700.3 413 84.0
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 8.9e-200 700.3 410 86.6
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.5e-199 699.5 412 87.6
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.3e-198 696.4 413 85.7
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.9e-198 695.3 415 87.5
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.9e-198 695.3 412 86.2
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 3.8e-198 694.9 412 85.0
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 4.9e-198 694.5 412 84.7
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 6.4e-198 694.1 424 83.5
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 8.4e-198 693.7 413 83.8
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 8.4e-198 693.7 415 86.3
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 4.2e-197 691.4 413 84.5
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 5.4e-197 691.0 414 84.5
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 7.1e-197 690.6 360 94.4
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-196 689.9 414 86.2
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.2e-196 689.9 414 86.2
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.2e-196 689.9 415 84.1
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 2.1e-196 689.1 414 86.2
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.7e-196 688.7 415 85.8
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 4.6e-196 688.0 413 84.0
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 4.6e-196 688.0 413 84.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 4.6e-196 688.0 412 85.2
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 6.0e-196 687.6 413 84.0
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.0e-195 686.8 413 83.1
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-195 686.0 413 83.8
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.3e-195 685.6 421 86.2
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.3e-195 685.6 421 86.2
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 5.1e-195 684.5 415 86.0
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 6.6e-195 684.1 419 84.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 8.7e-195 683.7 414 85.3
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.1e-194 683.3 411 87.3
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.5e-194 682.9 419 83.8
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.9e-194 682.6 419 83.8
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.5e-194 682.2 414 84.1
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.3e-194 681.8 412 86.7
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.3e-194 681.4 416 85.8
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.3e-194 681.4 412 87.9
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 5.6e-194 681.0 412 85.4
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.3e-193 679.9 413 83.3
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.1e-193 679.1 358 92.2
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 6.2e-193 677.6 412 86.2
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 8.1e-193 677.2 434 81.6
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 8.1e-193 677.2 358 91.9
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.1e-192 676.8 422 82.7
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.1e-192 676.8 359 92.5
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 3.1e-192 675.2 419 82.3
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.1e-192 675.2 414 84.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.0e-192 674.9 417 82.7
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 6.9e-192 674.1 415 85.1
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 6.9e-192 674.1 358 91.3
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.0e-192 673.7 425 84.5
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.0e-192 673.7 415 83.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.2e-191 673.3 410 86.3
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 6.4e-190 667.5 383 88.5
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.9e-189 666.0 367 89.4
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.3e-187 659.1 358 89.4
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.5e-178 629.8 379 86.5
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 7.4e-178 627.5 333 91.6
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.5e-175 619.8 358 83.2
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.0e-175 619.4 414 76.6
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 3.4e-175 618.6 413 80.6
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 7.6e-175 617.5 359 82.2
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.3e-174 616.7 353 83.9
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.2e-173 612.1 357 81.8
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.1e-164 582.8 406 74.9
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.3e-163 580.1 344 88.1
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 7.7e-159 564.3 327 89.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 2.5e-157 559.3 342 86.0
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.6e-151 539.3 357 72.8
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 8.5e-150 534.3 325 83.1
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 3.9e-147 525.4 410 69.8
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 9.7e-146 520.8 353 70.0
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.8e-142 508.8 319 81.5
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.5e-141 506.1 271 88.9
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.3e-139 499.6 303 87.5
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 5.2e-139 498.4 345 70.7
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.7e-137 492.3 358 68.7
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.4e-136 490.3 296 85.1
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.0e-131 472.2 248 92.7
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.6e-130 469.5 344 65.7
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.3e-121 440.7 305 74.1
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.9e-118 429.5 287 75.6
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.1e-104 384.4 290 66.6
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 7.8e-103 378.3 324 63.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.2e-58 231.5 132 85.6
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.5e-58 231.1 132 84.8
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 5.1e-54 216.1 353 38.5
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.4e-48 198.0 118 82.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.4e-48 198.0 118 81.4
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 4.1e-43 179.9 104 86.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-42 177.2 103 86.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.6e-42 177.2 103 86.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 2.6e-37 160.6 94 85.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-36 158.3 101 79.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-33 148.3 94 79.8
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 4.2e-32 143.3 105 74.3
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.4e-27 128.3 125 58.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 3.1e-27 127.1 105 68.6
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-23 115.2 71 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.8e-22 111.3 75 74.7
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.3e-21 107.1 81 71.6
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 9.7e-21 105.5 62 85.5
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 4.1e-19 100.1 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 9.1e-19 99.0 75 70.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 4.7e-15 86.7 87 64.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.5e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 8.0e-07 59.3 53 58.5


User provided reference genes

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