Gene: AT3G56940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G56940
  • Transcript Identifier AT3G56940.2
  • Gene Type Coding gene
  • Location Chr3 : 21076825-21078269 : positive

Gene Family Information

  • ID HOM05D004558
  • #Genes/#Species 158/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G56940.2
  • symbol CRD1
  • Alias ACSF,CHL27
  • full_name COPPER RESPONSE DEFECT 1
  • uniprot Q9M591

Descriptions

  • Description dicarboxylate diiron protein, putative (Crd1)
  • Computational description COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, oxidation reduction, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251); Has 877 Blast hits to 876 proteins in 230 species: Archae - 0; Bacteria - 301; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).
  • Computational description COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, oxidation reduction, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015995
IMP
IBA
IEA
Gene Ontologychlorophyll biosynthetic process1 2
GO:0015995
IEA
InterProchlorophyll biosynthetic process
GO:0015979
IEA
GOA Databasephotosynthesis
GO:0015979
IEA
InterProphotosynthesis
GO:0009658
IMP
Gene Ontologychloroplast organization2
GO:1901401
IMP
Gene Ontologyregulation of tetrapyrrole metabolic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0048529
IMP
IBA
NAS, IEA
Gene Ontologymagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity1 3 4
GO:0048529
IEA
InterPromagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
GO:0046872
IEA
Gene Ontologymetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003677
TAS
Gene OntologyDNA binding5
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0003729
IDA
Gene OntologymRNA binding7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast8
GO:0009535
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
IDA, HDA
IBA
Gene Ontologychloroplast thylakoid membrane1 3 9
GO:0009706
IEA
GOA Databasechloroplast inner membrane
GO:0009706
IDA
Gene Ontologychloroplast inner membrane3
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope10
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid11
GO:0009536
IEA
GOA Databaseplastid
GO:0016020
IEA
GOA Databasemembrane
GO:0009579
IEA
GOA Databasethylakoid
GO:0009528
IEA
GOA Databaseplastid inner membrane
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009078 Ferritin-like superfamily
IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
IPR003251 Rubrerythrin
Mapman id Description
7.13.1.3.1 Coenzyme metabolism.chlorophyll metabolism.chlorophyll biosynthesis.Mg-protoporphyrin IX monomethylester cyclase complex.catalytic component CRD1