Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 2.6e-161 572.0 294 100.0
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 1.6e-126 456.4 242 96.7
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 2.2e-91 339.7 252 70.6
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 2.9e-91 339.3 252 71.0
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 6.4e-91 338.2 252 70.2
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 6.4e-91 338.2 251 70.9
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 1.2e-89 334.0 251 70.9
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 6.0e-89 331.6 251 69.7
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 4.3e-87 325.5 251 69.3
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 4.3e-87 325.5 252 67.5
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 1.1e-85 320.9 252 68.7
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 1.4e-85 320.5 251 67.7
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 4.4e-84 315.5 251 68.1
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 8.6e-80 301.2 258 64.0
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 4.4e-76 288.9 251 60.6
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 7.6e-76 288.1 249 63.5
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.3e-75 287.3 249 63.9
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 2.9e-75 286.2 252 63.1
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 4.1e-74 282.3 249 63.9
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 4.1e-74 282.3 248 63.7
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.6e-73 280.4 248 61.3
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 7.8e-73 278.1 252 62.3
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 3.0e-72 276.2 254 59.1
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 3.9e-72 275.8 248 59.7
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 5.1e-72 275.4 248 60.1
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 1.1e-71 274.2 248 59.3
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 1.5e-71 273.9 248 59.3
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 4.3e-71 272.3 248 59.3
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 1.2e-70 270.8 251 59.0
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.6e-70 270.4 248 58.5
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 2.8e-70 269.6 251 59.4
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 3.6e-70 269.2 248 58.5
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 4.7e-70 268.9 248 58.5
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 8.1e-70 268.1 268 58.2
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 2.4e-69 266.5 248 59.7
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 3.1e-69 266.2 248 57.7
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 3.1e-69 266.2 248 60.1
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 5.2e-69 265.4 251 60.2
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.2e-68 264.2 248 57.3
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 1.5e-68 263.8 248 58.5
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 1.5e-68 263.8 251 59.0
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 4.4e-68 262.3 253 59.7
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 5.8e-68 261.9 248 56.9
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 5.8e-68 261.9 251 58.2
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 7.6e-68 261.5 248 60.5
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 9.9e-68 261.2 251 59.4
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 1.7e-67 260.4 248 59.3
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 2.2e-67 260.0 250 58.0
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 6.4e-67 258.5 248 59.7
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.4e-66 257.3 251 56.6
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 2.4e-66 256.5 251 54.6
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 4.2e-66 255.8 249 56.6
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 4.2e-66 255.8 248 58.1
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 4.2e-66 255.8 251 55.8
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 5.4e-66 255.4 249 59.4
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 1.2e-65 254.2 245 59.2
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 3.5e-65 252.7 250 58.4
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 4.6e-65 252.3 248 56.9
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 7.8e-65 251.5 251 54.6
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 1.0e-64 251.1 249 56.2
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 1.7e-64 250.4 251 54.2
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 1.7e-64 250.4 251 54.6
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.7e-64 250.4 251 53.8
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 2.3e-64 250.0 251 54.6
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 2.3e-64 250.0 251 55.0
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 2.3e-64 250.0 251 58.6
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 2.3e-64 250.0 248 56.9
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 3.9e-64 249.2 251 54.2
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 3.9e-64 249.2 251 54.2
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 3.9e-64 249.2 251 58.6
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 3.9e-64 249.2 249 57.4
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 3.9e-64 249.2 249 57.4
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 8.7e-64 248.1 251 54.2
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 8.7e-64 248.1 249 57.4
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 1.9e-63 246.9 251 53.4
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 2.5e-63 246.5 251 53.8
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 3.3e-63 246.1 248 56.9
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 3.3e-63 246.1 256 52.7
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 3.3e-63 246.1 251 53.4
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 4.3e-63 245.7 255 53.3
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 5.6e-63 245.4 251 53.4
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 7.3e-63 245.0 249 54.2
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 7.3e-63 245.0 284 51.4
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 7.3e-63 245.0 248 57.3
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 1.6e-62 243.8 249 55.8
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.6e-62 243.8 251 53.0
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 1.6e-62 243.8 251 53.4
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 1.4e-61 240.7 251 51.8
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 1.4e-61 240.7 251 52.2
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 2.4e-61 240.0 248 53.6
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 4.0e-61 239.2 253 53.4
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 5.3e-61 238.8 249 53.8
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 5.3e-61 238.8 244 53.3
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 9.0e-61 238.0 251 51.8
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 1.2e-60 237.7 251 53.0
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 1.5e-60 237.3 234 55.6
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 2.6e-60 236.5 251 52.2
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 7.6e-60 235.0 248 54.8
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 2.2e-59 233.4 248 54.8
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 3.8e-59 232.6 252 54.4
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 5.4e-58 228.8 248 51.6
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 1.9e-55 220.3 256 49.2
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.6e-54 217.2 287 44.9
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 1.6e-54 217.2 249 51.8
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 3.6e-54 216.1 252 48.0
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 3.6e-54 216.1 252 48.0
BcaC07g38179 Brassica carinata HOM05D004509 ORTHO05D005568 5.3e-53 212.2 212 52.8
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 9.0e-53 211.5 248 52.4
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 1.2e-52 211.1 323 40.2
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.7e-51 207.2 251 51.4
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.7e-51 207.2 251 51.4
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 2.4e-50 203.4 171 60.8
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 4.2e-50 202.6 248 52.0
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 7.9e-49 198.4 245 52.2
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 2.3e-48 196.8 248 48.4
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 5.1e-48 195.7 248 48.4
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 2.5e-47 193.4 172 58.1
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 3.3e-47 193.0 172 59.9
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 1.3e-46 191.0 212 51.4
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 1.3e-46 191.0 172 57.0
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 2.8e-46 189.9 176 56.2
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 1.8e-45 187.2 172 57.0
SEGI_41248 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 1.5e-44 184.1 182 53.8
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 7.6e-44 181.8 249 47.8
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 4.9e-43 179.1 257 47.5
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 1.1e-42 177.9 167 58.1
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 1.9e-42 177.2 249 45.8
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 7.9e-41 171.8 138 64.5
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 9.6e-39 164.9 229 45.0
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 2.1e-38 163.7 164 51.2
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 6.9e-37 158.7 171 48.5
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 6.9e-37 158.7 171 48.5
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 9.0e-37 158.3 195 49.2
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 7.6e-36 155.2 164 47.6
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 3.8e-35 152.9 164 48.2
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 1.3e-32 144.4 238 41.6
SEGI_07953 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 3.4e-28 129.8 127 55.1
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 4.2e-26 122.9 116 52.6
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 7.2e-26 122.1 112 56.2
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 1.4e-24 117.9 108 57.4
BcaNung06355 Brassica carinata HOM05D004509 ORTHO05D005568 5.0e-19 99.4 112 50.9
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 5.7e-15 85.9 68 58.8
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 5.7e-15 85.9 68 58.8
arahy.Tifrunner.gnm1.ann1.G4V0MI Arachis hypogaea HOM05D034079 ORTHO05D082353 1.3e-14 84.7 111 45.9
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 2.2e-14 84.0 113 47.8
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 2.2e-14 84.0 113 47.8
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 3.7e-14 83.2 110 48.2
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.5e-10 71.2 65 53.8


User provided reference genes

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