Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.9e-173 612.5 312 100.0
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.3e-171 606.3 312 99.4
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.0e-147 525.4 313 85.9
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 8.7e-147 523.9 315 85.7
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 9.6e-146 520.4 314 84.7
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.4e-144 515.8 313 85.0
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 6.9e-144 514.2 316 84.2
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.2e-143 513.5 315 83.5
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 3.4e-143 511.9 314 84.1
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.2e-140 503.4 314 83.1
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 4.6e-140 501.5 315 82.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.1e-137 492.7 313 80.5
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.6e-127 459.1 311 76.8
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 5.0e-126 454.9 312 77.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 7.2e-125 451.1 318 73.6
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.1e-124 449.5 313 75.1
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.1e-124 449.5 313 75.1
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 3.6e-124 448.7 318 73.6
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.6e-124 448.7 312 75.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.6e-124 448.7 315 75.6
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 4.6e-124 448.4 315 75.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.3e-123 446.8 318 72.6
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.0e-123 445.7 313 75.4
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 3.0e-123 445.7 313 74.4
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.1e-123 444.9 322 72.7
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 8.7e-123 444.1 315 74.6
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.3e-122 441.8 313 75.1
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.3e-122 441.8 313 75.1
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 5.7e-122 441.4 313 73.5
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.4e-122 441.0 313 75.1
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.3e-121 440.3 312 72.8
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-121 440.3 312 72.8
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.3e-121 440.3 312 74.4
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.6e-121 439.9 313 73.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.6e-121 439.9 313 73.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.6e-121 439.9 312 74.4
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.2e-121 439.5 313 73.2
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.8e-121 439.1 312 73.4
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.8e-121 439.1 315 72.7
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.4e-120 436.0 320 72.2
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.4e-120 436.0 314 72.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.1e-120 435.3 313 72.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 4.1e-120 435.3 316 72.8
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.0e-119 433.0 312 71.2
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.7e-118 429.9 314 72.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 3.8e-118 428.7 314 72.9
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.9e-117 426.4 315 72.4
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.9e-117 426.4 312 72.1
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.5e-117 426.0 314 71.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 7.2e-117 424.5 311 72.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.4e-117 424.1 315 70.8
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.4e-117 424.1 316 70.9
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.1e-116 422.9 312 70.8
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.1e-116 422.9 312 69.9
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.7e-116 422.5 316 71.5
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.6e-116 422.2 316 70.9
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 6.1e-116 421.4 312 70.5
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.3e-115 419.5 316 69.9
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.1e-115 418.3 316 69.9
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.1e-114 417.2 314 71.7
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.5e-114 416.8 315 71.1
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-114 416.8 312 70.2
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.6e-114 416.0 312 70.2
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 7.4e-114 414.5 321 67.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.3e-113 413.7 312 71.2
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.3e-113 413.7 312 68.9
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 3.7e-113 412.1 318 67.9
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.7e-113 412.1 353 64.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.7e-113 412.1 314 68.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 8.2e-113 411.0 349 64.5
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.4e-112 410.2 312 68.9
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.2e-111 407.1 293 73.7
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.6e-111 406.0 316 70.6
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 4.5e-111 405.2 319 68.0
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 4.5e-111 405.2 328 66.8
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.0e-110 404.1 318 68.6
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.3e-110 403.7 311 67.8
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.3e-110 403.7 315 67.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.7e-110 403.3 320 67.2
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 6.5e-110 401.4 312 67.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 6.5e-110 401.4 319 66.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 6.5e-110 401.4 315 69.8
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.1e-109 400.6 312 68.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.1e-109 400.6 315 68.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.4e-109 400.2 321 65.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.4e-109 400.2 314 67.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.9e-109 399.8 312 66.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 5.5e-109 398.3 312 68.3
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 5.5e-109 398.3 312 68.3
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 5.5e-109 398.3 312 68.3
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.6e-108 396.7 312 67.6
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.6e-108 396.7 312 67.6
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 3.9e-107 392.1 273 76.2
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.6e-106 389.4 312 65.7
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 5.7e-106 388.3 313 65.2
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.4e-104 383.6 313 66.1
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.1e-101 374.0 220 85.5
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 9.4e-101 370.9 338 60.1
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.6e-100 370.2 328 60.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 6.1e-100 368.2 334 62.0
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 8.0e-100 367.9 270 71.1
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 9.7e-98 360.9 345 58.3
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 8.2e-97 357.8 288 67.0
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 5.9e-95 351.7 227 77.1
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 3.8e-94 349.0 277 69.7
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.2e-92 344.0 312 63.5
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.7e-92 342.8 212 81.6
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 6.1e-92 341.7 203 83.7
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.0e-91 340.9 310 58.1
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.3e-91 339.7 315 57.5
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.6e-90 336.3 268 66.4
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 5.4e-88 328.6 317 59.6
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 3.8e-86 322.4 312 56.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 8.5e-86 321.2 250 68.8
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-85 320.9 285 62.1
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-84 317.0 314 57.0
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 2.4e-80 303.1 185 81.6
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.9e-69 266.9 193 75.6
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.4e-66 256.1 190 70.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 5.4e-64 248.8 294 50.0
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.0e-62 244.6 414 41.3
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 8.1e-60 235.0 191 69.1
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.3e-59 233.4 386 41.7
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 2.3e-59 233.4 253 57.7
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 2.2e-49 200.3 117 88.9
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.9e-48 197.2 227 48.0
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.1e-44 183.7 313 41.5
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.9e-41 173.3 196 53.1
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-40 171.4 95 92.6
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.9e-40 170.6 241 42.7
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.5e-37 161.0 107 72.9
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 2.8e-36 156.8 96 86.5
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.4e-35 154.5 206 44.2
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.4e-35 154.5 122 68.0
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.6e-34 150.2 93 86.0
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.1e-32 142.1 125 60.8
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.1e-32 142.1 125 60.8
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 1.2e-31 141.4 129 65.1
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-31 141.0 80 88.8
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 6.7e-30 135.6 192 42.7
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.1e-28 130.6 80 81.2
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.2e-26 124.8 142 51.4
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.6e-23 112.8 99 62.6
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.3e-22 111.3 240 36.2
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.9e-15 85.5 111 51.4
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 9.7e-13 78.6 62 66.1
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.5e-10 69.7 40 75.0
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.2e-09 67.4 42 71.4
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.5e-08 63.9 43 72.1
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.6e-07 61.2 62 58.1
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.8e-06 57.8 57 63.2


User provided reference genes

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