Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 0.0e+00 2161.3 1098 100.0
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 0.0e+00 2075.4 1092 96.6
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 0.0e+00 1185.2 1206 57.4
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 0.0e+00 1177.5 1434 49.7
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 0.0e+00 1169.8 1426 50.6
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 0.0e+00 1142.5 1424 49.5
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 0.0e+00 1125.5 1423 48.3
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 2.4e-308 1062.4 1482 44.9
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.1e-304 1049.3 1500 44.7
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 4.4e-302 1041.6 1500 44.1
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 6.3e-200 702.2 1164 41.8
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 5.9e-198 695.7 1158 42.1
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 2.3e-194 683.7 1156 40.9
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 3.1e-191 673.3 1172 39.8
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.3e-185 653.3 1146 39.4
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 6.3e-184 649.0 1175 38.9
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 2.4e-183 647.1 1208 38.9
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.0e-183 645.6 1111 39.2
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-182 644.4 1186 38.5
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.9e-182 642.5 1173 38.6
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 1.3e-181 641.3 1450 34.2
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 1.6e-179 634.4 1449 33.9
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.1e-179 634.0 1173 39.0
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 3.3e-177 626.7 1144 39.2
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 9.8e-169 598.6 1463 33.2
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 3.0e-162 577.0 1173 37.9
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.8e-159 567.8 1158 37.0
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 6.8e-154 549.3 1376 33.2
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 9.2e-151 538.9 698 49.0
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 4.3e-148 530.0 1439 31.7
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 4.4e-145 520.0 1570 29.2
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 1.3e-144 518.5 1432 31.0
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 8.6e-141 505.8 1362 30.4
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 2.3e-138 497.7 668 47.2
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 5.2e-138 496.5 1489 29.9
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 8.9e-138 495.7 1176 33.4
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.5e-137 492.7 789 41.2
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 4.9e-136 490.0 1467 31.0
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 3.5e-134 483.8 1273 31.5
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.0e-133 482.3 1188 32.7
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 1.0e-133 482.3 1188 32.7
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 5.1e-133 479.9 1447 30.1
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 8.6e-133 479.2 1134 33.6
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 4.7e-131 473.4 1384 30.6
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.6e-129 467.6 1513 29.1
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.4e-129 467.2 1519 29.0
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 1.7e-128 464.9 1457 29.6
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 6.4e-128 463.0 1306 31.1
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 2.7e-126 457.6 1377 30.9
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 1.1e-124 452.2 665 43.6
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.1e-124 452.2 1001 34.1
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 8.1e-123 446.0 1001 34.1
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.1e-122 445.7 1177 33.0
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.1e-122 444.1 1208 32.2
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.5e-121 441.8 1466 29.0
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 4.4e-121 440.3 1453 29.5
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.4e-119 435.3 665 45.0
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.4e-119 434.5 661 45.1
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 3.2e-119 434.1 1118 33.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 1.6e-118 431.8 1069 32.5
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.1e-118 431.4 1115 32.9
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 1.6e-115 421.8 1346 29.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 5.3e-114 416.8 688 40.3
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 2.9e-112 411.0 1031 33.4
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 5.4e-111 406.8 656 41.5
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 9.3e-111 406.0 679 39.9
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 7.9e-110 402.9 663 40.9
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 1.0e-109 402.5 664 40.4
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 6.7e-109 399.8 657 42.9
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 1.9e-108 398.3 664 40.2
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 1.6e-107 395.2 666 40.7
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 6.2e-107 393.3 710 40.0
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 1.5e-105 388.7 672 40.8
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 7.6e-105 386.3 652 40.8
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 2.2e-104 384.8 681 38.5
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 2.4e-103 381.3 1407 27.8
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.2e-103 380.9 1397 27.9
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 2.7e-102 377.9 1413 27.8
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 3.5e-102 377.5 722 39.6
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.8e-101 375.2 671 40.5
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.8e-101 375.2 669 40.8
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 6.7e-101 373.2 1458 27.4
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.1e-100 372.5 674 40.8
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 3.7e-99 367.5 639 40.8
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 8.2e-99 366.3 1434 27.5
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 2.4e-98 364.8 685 39.6
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 4.0e-98 364.0 962 32.8
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.8e-97 360.1 662 38.7
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.0e-96 359.4 1467 28.0
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 2.2e-96 358.2 712 37.9
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 2.9e-96 357.8 716 37.7
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 8.4e-96 356.3 708 37.7
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.1e-95 355.9 708 37.7
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 3.2e-95 354.4 1430 26.9
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 9.1e-82 309.7 744 34.3
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.8e-80 304.3 277 58.8
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.0e-72 279.6 494 39.5
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 1.1e-68 266.2 270 51.9
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 7.7e-65 253.4 469 38.0
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.2e-57 229.6 1079 25.9
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 1.3e-56 226.1 431 35.7
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.5e-55 221.9 313 44.1
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 2.0e-52 212.2 210 52.4
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 8.6e-48 196.8 502 33.5
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.5e-47 196.1 481 30.4
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.6e-41 176.0 284 38.0
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.3e-40 172.9 518 30.3
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 8.0e-38 163.7 155 55.5
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 1.3e-35 156.4 230 39.6
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 8.3e-35 153.7 363 30.9
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.5e-33 148.3 485 27.2
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.8e-30 138.7 222 33.3
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 3.7e-27 128.3 322 31.7
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 9.2e-18 97.1 237 29.5
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.8e-11 75.1 267 32.6
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 3.0e-08 65.5 235 26.4
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 5.1e-08 64.7 145 28.3
TPR.G29332 Trifolium pratense HOM05D000106 ORTHO05D011406 4.8e-06 58.2 80 40.0


User provided reference genes

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