Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 0.0e+00 1359.0 743 100.0
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 2.0e-266 922.5 720 68.3
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 2.9e-265 918.7 752 66.9
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 1.0e-262 910.2 760 68.4
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.1e-260 902.5 713 67.5
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 5.3e-259 897.9 704 69.3
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 7.1e-256 887.5 719 69.0
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 2.5e-245 852.4 702 67.7
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 2.8e-244 849.0 712 66.6
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.5e-237 825.9 653 68.6
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 9.4e-224 780.8 669 60.4
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 9.4e-224 780.8 669 60.4
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 3.3e-221 772.3 655 59.4
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 2.0e-210 736.5 719 55.4
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 4.5e-210 735.3 636 58.8
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 8.5e-209 731.1 658 56.1
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 4.2e-208 728.8 671 55.9
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 1.6e-207 726.9 407 93.4
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 2.7e-207 726.1 642 58.3
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 6.1e-207 724.9 646 57.0
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 4.0e-206 722.2 638 57.8
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 4.4e-205 718.8 653 55.9
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.1e-203 714.1 666 54.8
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 5.4e-203 711.8 819 48.7
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 2.0e-202 709.9 709 53.0
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 3.5e-202 709.1 679 55.8
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.0e-201 707.6 647 57.2
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.7e-201 706.8 662 54.8
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 2.2e-201 706.4 662 54.8
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 2.2e-201 706.4 667 55.9
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.1e-200 704.1 663 55.4
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 1.1e-200 704.1 646 54.6
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.2e-199 700.7 635 57.0
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 1.0e-198 697.6 647 54.6
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 3.0e-198 696.0 630 57.1
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 5.2e-198 695.3 647 56.3
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 8.8e-198 694.5 648 55.6
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 8.8e-198 694.5 654 53.8
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.1e-195 687.6 664 53.3
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 2.4e-195 686.4 654 54.6
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 1.6e-194 683.7 721 50.9
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 3.5e-194 682.6 689 51.7
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 7.7e-194 681.4 687 51.7
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.3e-193 680.6 724 51.2
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 5.6e-192 675.2 653 53.4
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.3e-192 674.9 724 50.6
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 9.5e-192 674.5 724 51.0
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.6e-191 673.7 736 49.9
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.4e-190 670.6 670 52.7
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 7.5e-189 664.8 662 52.9
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 6.4e-188 661.8 664 52.6
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 1.6e-186 657.1 706 50.4
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 2.7e-186 656.4 647 50.7
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 2.7e-186 656.4 662 50.8
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 7.8e-186 654.8 735 48.4
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.7e-185 653.7 627 51.8
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.9e-185 652.5 646 52.2
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.1e-184 651.0 639 52.6
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.5e-184 650.6 639 51.5
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.5e-184 649.8 657 52.1
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 4.3e-184 649.0 661 52.2
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 4.3e-184 649.0 661 52.0
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 5.6e-184 648.7 614 53.1
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 4.4e-181 639.0 634 52.1
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.7e-180 637.1 649 51.8
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 2.2e-180 636.7 638 51.4
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 2.2e-180 636.7 1011 39.2
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 2.9e-180 636.3 614 52.4
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 3.7e-180 636.0 619 52.8
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 2.4e-179 633.3 645 51.6
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 5.4e-179 632.1 650 50.3
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.0e-177 627.9 662 49.2
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 5.0e-177 625.5 652 50.5
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 5.0e-177 625.5 660 49.8
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 5.6e-176 622.1 661 50.4
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 5.6e-176 622.1 715 47.3
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 2.1e-175 620.2 651 51.3
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 3.1e-174 616.3 670 49.1
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.8e-174 615.1 622 51.1
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 3.4e-173 612.8 645 49.3
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.4e-173 612.8 622 51.1
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 4.9e-172 609.0 646 49.2
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 6.4e-172 608.6 646 49.2
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 7.1e-171 605.1 612 50.3
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 1.2e-170 604.4 622 51.9
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 3.0e-169 599.7 650 48.3
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 3.9e-169 599.4 646 48.8
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 1.5e-168 597.4 628 50.8
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 3.6e-167 592.8 646 47.4
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.7e-164 583.9 645 47.9
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 3.8e-164 582.8 566 54.1
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 4.1e-163 579.3 703 43.7
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.3e-161 574.3 653 49.2
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.8e-159 566.6 648 48.1
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 6.0e-154 548.9 575 49.9
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 1.5e-149 534.3 656 42.8
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 6.2e-143 512.3 626 43.5
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.4e-142 511.1 649 45.1
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.6e-130 471.1 486 50.8
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.3e-123 445.3 663 40.6
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.2e-106 391.7 339 59.6
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 1.2e-96 358.6 299 59.2
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.5e-96 358.2 673 33.4
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.3e-95 355.1 585 37.6
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 2.7e-90 337.4 584 35.8
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 8.6e-84 315.8 624 32.7
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 2.1e-82 311.2 593 33.2
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 4.3e-75 287.0 548 35.9
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.9e-67 261.5 357 40.9
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.3e-63 248.8 214 57.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.7e-61 241.1 647 29.4
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 1.1e-54 219.2 619 29.4
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 6.6e-52 209.9 240 45.8
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 8.1e-42 176.4 671 25.0
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 4.4e-40 170.6 648 23.8
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.9e-35 155.2 173 60.7
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 1.6e-29 135.6 324 32.4
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 4.6e-29 134.0 153 49.0
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.8e-26 124.8 136 47.1
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 1.7e-23 115.5 462 25.3
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.4e-22 111.7 146 43.8
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 9.6e-19 99.8 131 45.0
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.4e-14 85.9 79 50.6
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.4e-14 85.9 83 51.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 7.9e-13 80.1 155 34.8
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.8e-12 79.0 87 46.0
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 3.9e-12 77.8 73 52.1
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 2.2e-10 72.0 125 35.2
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 5.3e-09 67.4 145 30.3
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.5e-08 65.9 138 33.3
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.0e-07 63.2 69 43.5


User provided reference genes

Program Settings