Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.3e-169 599.7 336 100.0
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.8e-166 589.3 352 95.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 3.0e-161 572.0 339 95.6
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-160 568.9 338 95.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.1e-158 563.5 338 94.4
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.4e-158 562.4 336 93.2
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 3.1e-158 562.0 338 92.9
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.5e-157 559.7 341 93.5
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.7e-156 556.2 337 92.0
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.7e-156 556.2 337 92.0
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.5e-156 554.3 340 94.1
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 8.4e-156 553.9 340 92.1
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-155 553.5 337 91.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.5e-155 552.4 338 91.4
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.5e-155 552.4 336 91.4
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 7.1e-155 550.8 338 90.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.6e-154 549.7 337 90.5
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.1e-154 549.3 338 91.1
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 3.5e-154 548.5 337 90.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 6.0e-154 547.7 338 87.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-153 547.0 338 89.9
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 2.3e-153 545.8 336 91.1
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.0e-153 545.4 338 90.8
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 3.0e-153 545.4 340 93.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.9e-153 545.0 337 89.6
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 8.7e-153 543.9 349 88.3
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.9e-152 542.7 336 88.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.5e-152 542.3 337 90.2
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 89.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 5.7e-152 541.2 336 91.4
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 7.4e-152 540.8 336 87.8
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.3e-151 540.0 338 89.6
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.3e-151 540.0 336 90.2
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.2e-151 539.3 337 89.3
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.7e-151 538.5 336 88.4
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.8e-151 538.1 337 90.2
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.4e-150 536.6 336 89.0
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.4e-150 536.6 336 89.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.8e-150 536.2 338 88.8
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 3.1e-150 535.4 338 89.3
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 3.1e-150 535.4 338 89.1
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.1e-150 535.0 337 88.7
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.5e-149 533.1 337 88.4
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 5.9e-149 531.2 337 91.1
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.0e-148 530.4 337 82.5
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 88.4
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 88.5
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 89.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 89.0
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.5e-148 527.7 337 87.2
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 88.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 88.7
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.1e-147 526.9 339 87.9
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.4e-147 526.6 338 88.5
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.4e-147 526.6 359 85.0
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.6e-146 523.1 336 88.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 4.6e-146 521.5 321 92.8
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 4.6e-146 521.5 338 86.1
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 6.1e-146 521.2 338 84.0
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.1e-146 521.2 337 86.9
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.1e-146 521.2 338 85.8
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 6.1e-146 521.2 338 87.0
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 7.9e-146 520.8 338 84.0
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.0e-145 520.4 338 84.3
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.8e-145 519.6 336 86.3
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 85.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.9e-145 518.5 338 88.2
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.7e-145 517.7 338 86.4
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.1e-144 516.9 372 80.6
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.3e-144 515.0 325 91.1
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 4.3e-144 515.0 325 91.1
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.3e-144 515.0 321 91.3
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 7.4e-144 514.2 337 85.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 9.7e-144 513.8 336 83.6
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.2e-143 512.7 352 83.5
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 3.7e-143 511.9 365 80.3
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 3.7e-143 511.9 339 85.3
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 4.8e-143 511.5 337 86.4
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 6.3e-143 511.1 356 83.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 6.3e-143 511.1 356 83.1
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.4e-142 509.2 344 83.1
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 4.1e-142 508.4 329 88.4
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.1e-142 508.4 339 85.0
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 9.1e-142 507.3 336 79.8
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 9.1e-142 507.3 340 82.1
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.2e-141 506.9 337 87.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 2.6e-141 505.8 330 86.7
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 3.4e-141 505.4 338 84.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 3.4e-141 505.4 338 84.0
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 3.4e-141 505.4 321 87.9
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 5.9e-141 504.6 337 86.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.9e-140 502.3 347 82.7
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.1e-139 500.4 347 82.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.2e-139 498.8 337 83.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 5.5e-139 498.0 337 84.3
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 7.2e-139 497.7 348 83.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.6e-138 495.4 331 84.9
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.0e-136 489.6 366 77.3
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 9.7e-136 487.3 377 76.4
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.3e-135 486.9 336 81.2
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.8e-134 483.0 338 84.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.2e-131 472.2 336 73.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-130 470.3 367 77.7
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.2e-130 470.3 367 77.7
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.0e-129 465.7 336 78.9
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.2e-129 464.9 305 88.2
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 9.7e-128 460.7 284 92.6
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.3e-127 460.3 337 79.8
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 6.7e-121 438.0 334 80.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.7e-119 432.2 353 73.7
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 3.1e-118 429.1 516 55.2
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 6.5e-116 421.4 274 90.9
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.7e-111 405.6 223 89.2
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.5e-109 398.7 339 74.9
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 9.5e-107 391.0 321 76.0
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.4e-102 376.3 256 88.7
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 3.1e-102 375.9 319 74.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.6e-98 363.6 277 77.3
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.9e-97 357.8 337 68.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.2e-94 349.4 336 65.8
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 6.4e-87 325.1 382 48.4
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 5.6e-83 312.0 147 100.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 5.2e-81 305.4 329 52.6
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 3.3e-67 259.6 182 73.1
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 3.1e-65 253.1 210 79.0
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 7.8e-61 238.4 326 46.6
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-53 213.0 116 86.2
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.7e-44 182.2 165 67.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.5e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.9e-41 172.2 91 94.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 5.0e-39 166.0 89 100.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-35 154.8 89 91.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.4e-22 111.3 64 93.8
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 4.8e-18 96.3 203 29.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.8e-17 94.4 200 32.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-12 78.6 87 77.0
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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