Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 0.0e+00 1643.2 936 100.0
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 0.0e+00 1588.9 936 97.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 0.0e+00 1152.1 966 73.1
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 0.0e+00 1145.2 961 70.7
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 0.0e+00 1133.2 962 70.3
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 0.0e+00 1132.9 909 72.9
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 0.0e+00 1122.1 961 69.7
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 0.0e+00 1113.2 971 67.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 0.0e+00 1112.8 961 71.6
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 0.0e+00 1105.5 972 67.4
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 4.5e-311 1071.2 968 66.1
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 2.7e-305 1052.0 881 70.8
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 6.1e-297 1024.2 802 73.4
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.6e-276 956.4 969 61.9
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 3.5e-252 875.5 992 57.6
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 3.3e-250 869.0 934 57.0
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.6e-249 866.7 933 58.2
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 5.8e-247 858.2 992 55.3
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 3.8e-246 855.5 903 57.5
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 8.4e-246 854.4 1000 53.7
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 9.3e-245 850.9 902 57.9
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 3.9e-243 845.5 923 56.3
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.5e-242 842.8 1003 52.9
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 3.3e-242 842.4 980 55.6
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 5.6e-242 841.6 935 57.2
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 5.6e-242 841.6 930 56.1
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 3.7e-241 839.0 931 56.7
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 6.9e-240 834.7 901 55.8
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 8.4e-238 827.8 982 54.3
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.6e-236 823.5 912 56.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 7.9e-236 821.2 904 56.2
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 7.9e-236 821.2 929 55.1
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.3e-235 819.7 899 55.4
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.0e-235 819.3 929 55.0
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 3.3e-234 815.8 897 55.7
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 5.7e-234 815.1 926 55.1
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 3.7e-233 812.4 877 57.7
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 8.2e-233 811.2 897 55.2
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.6e-231 806.2 910 53.8
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 1.7e-230 803.5 865 57.3
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 2.5e-229 799.7 909 54.3
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 4.2e-229 798.9 909 53.4
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.1e-228 796.6 909 55.2
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 3.6e-228 795.8 910 55.2
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 5.1e-227 792.0 909 54.9
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.1e-226 790.8 936 53.7
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 3.3e-226 789.3 936 53.7
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 7.4e-226 788.1 898 54.2
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 7.4e-226 788.1 922 55.9
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 9.7e-226 787.7 897 54.3
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 4.8e-225 785.4 915 53.2
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.1e-224 784.3 930 53.4
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.1e-224 782.3 936 53.1
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 5.0e-222 775.4 975 50.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 8.5e-222 774.6 922 52.8
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 9.4e-221 771.2 908 52.1
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 2.1e-220 770.0 980 50.8
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 2.7e-220 769.6 904 52.5
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 3.9e-219 765.8 876 52.6
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 5.7e-218 761.9 975 49.9
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 2.2e-217 760.0 914 53.9
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.7e-214 750.4 961 49.7
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 1.1e-213 747.7 964 50.4
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 3.6e-212 742.7 956 49.5
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 7.9e-212 741.5 993 49.4
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 5.2e-211 738.8 960 50.8
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 2.6e-210 736.5 857 54.4
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 1.7e-209 733.8 972 49.5
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.7e-209 732.6 887 51.1
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 1.8e-208 730.3 906 51.2
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 8.5e-206 721.5 914 49.9
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 4.2e-205 719.2 931 52.4
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.2e-205 718.4 834 54.2
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.6e-204 717.2 897 50.4
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.0e-203 714.5 1015 47.0
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 1.4e-203 714.1 886 51.1
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 3.3e-202 709.5 836 53.0
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.9e-198 696.4 919 48.5
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.8e-198 696.0 971 46.9
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.5e-197 693.3 989 47.5
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 6.8e-195 685.3 919 49.5
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 2.4e-192 676.8 1013 45.4
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 7.0e-192 675.2 933 47.2
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.0e-183 647.1 984 44.6
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 2.9e-182 643.3 915 46.7
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 3.3e-181 639.8 987 44.3
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.8e-180 636.7 982 45.8
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 6.1e-180 635.6 878 47.9
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 3.0e-179 633.3 898 47.8
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.4e-176 624.4 976 44.6
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 3.2e-176 623.2 892 47.6
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 7.0e-176 622.1 970 44.4
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 2.3e-174 617.1 989 43.0
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 2.3e-174 617.1 989 43.0
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 2.5e-173 613.6 984 43.2
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 7.3e-173 612.1 984 43.8
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.1e-171 606.7 649 53.3
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 4.6e-167 592.8 902 45.1
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.6e-164 583.2 976 42.3
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.5e-162 577.8 969 42.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 1.2e-159 568.2 969 42.3
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 2.7e-159 567.0 986 44.3
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.3e-158 563.9 1002 42.1
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 8.6e-158 562.0 783 47.6
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 8.1e-156 555.4 873 42.6
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.2e-155 552.7 943 42.2
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 4.1e-152 543.1 949 42.7
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 8.1e-148 528.9 948 41.7
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.1e-147 528.5 919 41.5
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 4.9e-145 519.6 486 59.3
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 5.4e-136 489.6 912 38.7
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.4e-129 466.1 482 54.6
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 6.4e-129 466.1 480 55.2
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.7e-127 460.7 858 38.8
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 3.9e-110 403.7 291 73.9
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.0e-102 379.0 554 42.1
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.1e-99 367.1 539 43.6
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.2e-88 330.9 411 55.5
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 1.2e-82 312.4 403 52.4
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.9e-80 305.1 485 42.1
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 5.9e-74 283.5 507 44.2
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.1e-71 275.0 314 49.7
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 3.6e-63 247.7 414 41.8
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 6.1e-63 246.9 388 43.6
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.0e-62 246.1 414 46.4
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.7e-60 238.8 236 54.2
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 8.6e-57 226.5 171 66.7
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 5.2e-54 217.2 575 31.1
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 2.6e-53 214.9 478 31.8
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 2.6e-53 214.9 313 45.0
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.4e-53 214.5 400 46.0
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.4e-51 209.1 425 47.1
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 5.8e-37 160.6 159 53.5
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.5e-32 146.0 153 58.8
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.3e-32 144.4 153 57.5
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 7.1e-27 127.1 92 63.0
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 4.5e-21 107.8 77 66.2
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.1e-19 103.2 186 39.2
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.3e-16 91.7 118 48.3
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 5.6e-16 90.9 88 58.0
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 9.0e-14 83.6 72 63.9
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.5e-13 82.8 86 51.2
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.6e-10 71.2 135 44.4
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.9e-09 68.2 77 46.8
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 6.7e-09 67.4 141 39.7
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.6e-07 62.8 88 40.9
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 1.4e-06 59.7 53 60.4
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 5.3e-06 57.8 54 48.1


User provided reference genes

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