Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 2373.6 1331 100.0
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 2336.2 1328 98.4
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1563.9 1365 68.8
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1546.2 1352 67.9
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1515.7 1369 68.2
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1513.0 1365 68.0
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1506.1 1357 67.4
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1497.3 1370 66.9
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1494.2 1355 66.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1487.2 1353 66.6
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1471.8 1363 66.3
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1457.6 1350 65.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1419.8 1356 64.0
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1380.5 1356 63.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1228.8 1408 56.2
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1207.2 1410 57.2
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1200.7 1396 57.2
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1188.3 1401 57.5
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1177.5 1397 55.8
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1169.1 1421 56.1
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1165.6 1376 52.7
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1145.6 1461 54.1
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1140.9 1400 55.2
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1140.9 1369 53.4
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1140.6 1307 57.2
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1140.6 1408 56.1
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1132.9 1362 55.6
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1129.8 1403 55.2
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1124.0 1403 53.7
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1123.2 1375 53.5
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1122.5 1375 53.7
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1119.0 1380 53.3
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1111.3 1388 53.1
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1103.2 1391 56.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1095.5 1391 53.1
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1092.4 1386 54.9
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1088.9 1412 54.7
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1083.9 1400 54.1
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1082.4 1434 54.5
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1080.9 1416 54.1
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.1e-310 1068.9 1448 53.4
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 5.3e-310 1068.1 1460 51.7
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.0e-309 1066.2 1380 53.9
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 4.5e-309 1065.1 1381 53.8
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.1e-307 1060.4 1414 53.3
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 1.9e-307 1059.7 1394 52.0
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 9.3e-307 1057.4 1396 53.7
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 1.0e-305 1053.9 1374 53.1
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 3.3e-304 1048.9 1389 52.3
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 7.4e-304 1047.7 1380 52.4
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 6.2e-303 1044.6 1384 53.0
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 3.8e-300 1035.4 1377 51.6
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 2.5e-296 1022.7 1378 51.3
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 9.7e-296 1020.8 1491 49.8
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 2.4e-294 1016.1 1387 53.5
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 5.9e-293 1011.5 1370 51.3
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 5.0e-292 1008.4 1373 51.7
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 8.2e-279 964.5 1405 49.5
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.4e-278 963.0 1354 50.9
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 4.7e-274 948.7 1209 55.3
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.3e-273 946.4 1236 48.9
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 3.7e-271 939.1 1359 49.2
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.8e-270 936.8 1043 55.9
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.6e-269 932.9 1378 47.8
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.3e-268 930.6 1430 49.0
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 5.0e-268 928.7 1230 54.6
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 8.0e-258 894.8 1358 45.7
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.2e-256 891.0 1377 46.8
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.4e-256 889.4 1228 47.4
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 8.3e-255 884.8 1392 47.7
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 5.0e-252 875.5 1177 48.9
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 3.3e-251 872.8 1236 47.4
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 7.2e-251 871.7 1428 46.6
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.5e-251 871.3 1179 46.4
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.6e-250 870.5 1448 47.9
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 2.8e-250 869.8 1394 47.4
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 3.6e-250 869.4 1056 50.6
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 2.0e-248 863.6 1422 46.7
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 5.7e-248 862.1 1395 47.5
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.1e-246 857.8 1416 47.0
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.2e-245 854.4 1422 46.6
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 8.6e-244 848.2 1355 46.4
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 2.5e-243 846.7 1386 46.4
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 4.3e-243 845.9 1414 45.3
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 8.9e-241 838.2 1391 45.6
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.5e-237 826.2 1373 46.2
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.5e-237 826.2 1373 46.2
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 2.3e-236 823.5 1386 45.7
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 3.0e-236 823.2 1375 46.0
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 7.3e-235 818.5 1380 45.6
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 4.6e-229 799.3 1380 47.1
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 7.8e-229 798.5 1441 41.5
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 3.0e-228 796.6 1186 45.1
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-227 794.7 1216 43.9
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 7.3e-227 792.0 1373 43.0
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 1.6e-226 790.8 972 49.3
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 6.4e-223 778.9 1356 47.0
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 5.1e-220 769.2 930 49.9
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.7e-218 762.7 1344 41.4
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 6.2e-218 762.3 1366 47.1
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.4e-217 760.4 1516 41.1
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 2.0e-216 757.3 1498 41.5
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.9e-215 752.7 1094 52.3
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 2.5e-211 740.3 1364 44.5
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.6e-208 730.3 1390 41.9
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.4e-208 729.9 785 55.3
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 2.2e-207 727.2 1352 43.9
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 3.5e-205 719.9 1387 44.4
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 9.9e-200 701.8 833 51.7
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 3.1e-193 680.2 1191 41.6
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 9.0e-185 652.1 1015 49.3
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.8e-183 646.7 1343 37.6
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 3.2e-182 643.7 1377 41.8
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.3e-180 637.5 943 45.3
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 7.4e-179 632.5 1379 40.0
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.4e-174 618.2 1139 40.5
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.6e-152 544.3 794 46.0
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 5.5e-150 536.6 1222 36.6
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.8e-145 521.5 532 57.3
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.2e-139 502.3 923 48.1
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 4.4e-139 500.4 1242 37.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.9e-136 490.0 416 64.7
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.1e-134 485.7 1285 36.5
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 7.2e-134 483.0 1239 35.1
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 9.5e-134 482.6 1249 36.7
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 7.0e-121 439.9 512 54.9
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.8e-108 398.7 1376 31.6
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.4e-105 389.0 1373 31.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.1e-104 385.2 335 63.9
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.4e-97 362.5 1400 31.3
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.3e-94 350.9 312 58.7
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 9.9e-83 313.2 1210 30.2
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.9e-82 310.8 1257 28.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 3.3e-70 271.6 232 64.7
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.9e-64 250.4 1318 30.5
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 4.5e-59 234.6 384 46.9
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.0e-58 233.4 861 29.3
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.0e-55 221.9 976 28.2
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 2.5e-54 218.8 815 29.4
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.4e-54 217.2 1081 28.2
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 2.6e-51 208.8 436 39.2
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 3.4e-51 208.4 199 56.3
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 5.0e-50 204.5 371 39.1
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 6.5e-50 204.1 329 39.2
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.5e-49 202.2 210 53.8
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.1e-46 193.4 863 25.5
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.3e-45 189.9 1174 25.0
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 2.4e-44 185.7 337 37.4
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.3e-44 184.5 697 27.8
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 7.2e-41 174.1 250 42.8
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 3.6e-40 171.8 537 29.4
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.0e-39 170.2 177 53.7
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.8e-39 169.5 1065 25.7
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 1.1e-38 166.8 678 29.6
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 8.2e-37 160.6 588 40.8
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 9.1e-36 157.1 671 27.0
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.7e-34 152.9 1140 24.3
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.2e-32 146.7 1081 23.7
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.1e-32 146.0 707 27.6
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.8e-30 137.1 375 36.0
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.0e-26 127.1 208 49.5
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.1e-25 123.6 1347 22.2
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.5e-25 123.2 204 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 1.9e-25 122.9 902 24.9
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 2.3e-23 115.9 81 65.4
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.3e-21 110.2 194 31.4
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.7e-21 109.8 161 40.4
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 8.3e-21 107.5 146 41.8
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 2.7e-19 102.4 90 58.9
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 3.8e-18 98.6 88 54.5
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 6.6e-18 97.8 122 52.5
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 5.6e-17 94.7 148 41.9
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 1.2e-14 87.0 244 38.1
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.4e-12 79.3 266 29.7
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 1.2e-11 77.0 52 69.2
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 1.6e-11 76.6 85 47.1
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 5.6e-09 68.2 69 52.2
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.7e-08 65.1 136 32.4
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.8e-06 57.4 42 54.8


User provided reference genes

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