Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 5.8e-255 883.6 417 100.0
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 5.4e-253 877.1 417 99.3
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 2.0e-207 725.7 413 80.9
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 2.9e-206 721.8 420 81.2
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 6.5e-206 720.7 406 82.3
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.9e-205 719.2 420 79.8
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.6e-201 706.1 419 78.3
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.6e-199 698.7 415 78.8
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.4e-199 698.4 405 79.3
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 5.0e-190 667.9 412 75.0
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.6e-188 662.9 387 78.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 2.1e-188 662.5 403 75.4
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.7e-188 662.1 403 75.4
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 4.7e-188 661.4 403 75.2
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 3.3e-186 655.2 416 73.3
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 6.3e-185 651.0 416 73.6
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 4.5e-183 644.8 416 72.4
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 4.5e-183 644.8 401 74.3
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 5.9e-183 644.4 417 72.9
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.7e-182 642.9 387 76.2
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 8.5e-182 640.6 344 83.7
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 8.5e-182 640.6 408 71.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.5e-181 639.8 416 72.6
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.2e-181 638.3 416 71.4
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 4.2e-181 638.3 403 71.5
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 7.2e-181 637.5 403 73.0
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 9.4e-181 637.1 403 71.7
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 9.4e-181 637.1 419 70.2
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 2.7e-180 635.6 401 73.1
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.4e-179 633.3 415 71.3
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 6.7e-179 630.9 418 70.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.3e-178 628.6 413 70.7
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 7.5e-178 627.5 405 71.1
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.7e-177 626.3 403 71.7
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 2.2e-177 625.9 416 70.7
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 2.8e-177 625.5 413 70.7
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 3.7e-177 625.2 414 69.8
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 4.8e-177 624.8 389 74.3
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 6.3e-177 624.4 461 64.6
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.2e-175 620.2 386 72.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 5.9e-175 617.8 405 70.1
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.3e-174 616.7 416 68.3
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 2.2e-174 615.9 419 69.2
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 5.0e-174 614.8 412 71.4
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 6.5e-174 614.4 415 67.5
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.5e-173 612.5 396 73.0
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.5e-173 612.5 413 70.0
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 9.4e-173 610.5 411 67.9
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 9.4e-173 610.5 415 69.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.2e-172 610.1 388 71.4
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 2.7e-172 609.0 415 69.9
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.3e-171 605.9 412 66.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-170 603.6 412 69.4
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.3e-169 600.1 407 70.0
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 2.2e-169 599.4 415 66.3
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 6.3e-169 597.8 360 73.9
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 6.3e-169 597.8 464 63.1
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 5.4e-168 594.7 416 67.3
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 7.7e-167 590.9 405 66.9
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.3e-166 590.1 415 66.7
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 2.9e-166 589.0 409 68.2
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 6.5e-166 587.8 403 66.3
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 6.5e-166 587.8 413 66.3
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 9.5e-165 583.9 401 68.3
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.1e-164 582.8 404 66.8
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 3.6e-164 582.0 405 65.7
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.7e-164 581.6 406 66.3
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.0e-163 580.5 407 67.1
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.0e-163 580.5 401 67.1
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.8e-163 579.7 419 65.2
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 5.2e-163 578.2 407 66.1
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 6.8e-163 577.8 410 67.3
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 4.9e-161 571.6 363 72.7
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.1e-160 570.5 413 66.8
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.4e-160 570.1 410 66.6
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 2.4e-160 569.3 437 63.2
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.1e-160 568.9 417 64.3
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 2.7e-159 565.8 417 63.8
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 7.7e-159 564.3 404 64.9
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 6.6e-158 561.2 408 63.2
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 9.5e-157 557.4 345 71.9
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 1.6e-156 556.6 422 63.0
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 2.3e-155 552.7 375 67.7
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 6.8e-155 551.2 408 64.0
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.2e-154 550.4 421 62.5
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 6.4e-153 544.7 404 61.1
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.3e-153 544.3 373 68.9
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 1.8e-147 526.6 299 77.9
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 2.9e-145 519.2 438 58.9
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-144 516.2 364 66.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.2e-144 515.8 364 66.8
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 3.5e-143 512.3 413 60.3
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.3e-142 509.6 367 66.5
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 6.8e-139 498.0 336 67.3
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 9.8e-138 494.2 421 59.6
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.9e-136 490.0 378 61.6
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.2e-135 487.3 421 55.3
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.9e-133 479.9 421 55.1
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.2e-132 474.9 410 59.5
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 6.2e-132 474.9 320 69.7
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 8.1e-132 474.6 351 63.8
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.6e-130 469.5 351 63.5
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-130 469.5 354 63.6
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.2e-129 466.5 307 70.7
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 9.2e-128 461.1 371 59.3
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.6e-127 460.3 400 57.0
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.6e-127 460.3 371 58.2
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-127 459.1 408 57.6
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 8.9e-123 444.5 409 54.3
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.4e-120 437.2 407 53.1
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.5e-117 427.2 320 62.8
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 4.5e-114 415.6 358 57.8
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.4e-113 411.4 416 51.9
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-111 406.0 253 71.5
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 5.6e-109 398.7 436 47.5
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.8e-108 396.4 251 74.9
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 5.8e-106 388.7 274 66.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.3e-101 372.9 283 57.6
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.6e-98 363.2 260 66.9
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.0e-95 352.1 199 79.4
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 1.3e-94 350.9 415 44.6
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-94 350.5 272 62.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-92 342.8 341 53.7
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 6.3e-92 342.0 200 76.0
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-85 320.1 202 73.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-83 313.5 202 71.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.7e-82 308.5 200 71.5
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.7e-79 300.1 404 41.6
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 5.3e-75 285.8 167 75.4
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 7.9e-71 271.9 296 43.2
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 7.0e-67 258.8 165 70.9
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-58 231.1 194 59.3
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-58 229.9 144 72.9
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-58 229.9 144 72.9
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.5e-58 229.9 144 72.9
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-57 226.5 144 72.2
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 5.2e-54 216.1 216 52.8
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-53 214.5 154 65.6
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 2.7e-50 203.8 115 78.3
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-45 188.0 186 50.0
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-42 177.6 96 79.2
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 2.6e-37 160.6 86 82.6
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.2e-34 151.8 108 63.9
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.1e-30 138.7 100 64.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.2e-29 135.2 84 71.4
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-24 118.6 75 70.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-22 110.9 74 70.3
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 1.1e-19 102.1 48 93.8
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.0e-13 81.3 72 51.4
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 4.4e-13 80.1 57 66.7
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-11 74.3 43 72.1
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.1e-11 73.6 137 38.0
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 4.6e-10 70.1 36 86.1
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 7.8e-10 69.3 66 51.5
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.3e-09 68.6 65 53.8
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-08 63.9 52 51.9
arahy.Tifrunner.gnm1.ann1.GV0XVU Arachis hypogaea HOM05D001147 ORTHO05D000823 2.8e-07 60.8 29 93.1


User provided reference genes

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