Gene: PGSC0003DMG400002300

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400002300
  • Transcript Identifier PGSC0003DMT400005915
  • Gene Type Coding gene
  • Location ST4.03ch07 : 10498307-10507181 : positive

Gene Family Information

  • ID HOM05D004741
  • #Genes/#Species 155/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37434856
  • id PGSC0003DMG400002300.v4.03
  • uniprot M0ZQK0

Descriptions

  • Description RNA lariat debranching enzyme
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0009793
IEA
GOA Databaseembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016788
IEA
GOA Databasehydrolase activity, acting on ester bonds
GO:0016788
IEA
InterProhydrolase activity, acting on ester bonds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0008419
IBA
IEA
GOA DatabaseRNA lariat debranching enzyme activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007708 Lariat debranching enzyme, C-terminal
IPR041816 Lariat debranching enzyme, N-terminal metallophosphatase domain
IPR029052 Metallo-dependent phosphatase-like
IPR004843 Calcineurin-like phosphoesterase domain, ApaH type
Mapman id Description
16.2.8.1 RNA processing.pre-mRNA splicing.intron-lariat-RNA degrading.intron-lariat-RNA degrading enzyme (DBR1)