Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 4.1e-100 368.2 211 100.0
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 3.3e-97 358.6 206 100.0
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 4.3e-89 331.6 208 88.9
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 8.9e-87 323.9 208 86.5
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 3.4e-86 322.0 208 86.1
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 7.6e-86 320.9 208 86.1
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 2.2e-85 319.3 208 85.1
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 8.3e-85 317.4 208 86.1
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 1.1e-84 317.0 208 84.6
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 1.4e-84 316.6 209 85.6
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 6.0e-83 311.2 208 83.7
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 3.0e-82 308.9 204 84.8
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 2.5e-81 305.8 201 84.1
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 3.3e-81 305.4 220 78.6
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 9.6e-81 303.9 208 83.2
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 9.6e-81 303.9 207 83.1
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 2.1e-80 302.8 215 78.6
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 3.6e-80 302.0 212 78.8
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 3.6e-80 302.0 233 77.3
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 3.6e-80 302.0 214 78.0
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 4.7e-80 301.6 212 78.3
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.1e-79 300.4 211 79.1
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 1.1e-79 300.4 213 76.5
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 5.2e-79 298.1 205 80.0
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 5.2e-79 298.1 198 81.3
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 8.9e-79 297.4 218 76.6
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 8.9e-79 297.4 218 76.6
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 1.2e-78 297.0 197 81.7
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 1.2e-78 297.0 219 76.3
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 1.5e-78 296.6 199 81.4
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 4.4e-78 295.0 210 76.7
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 4.4e-78 295.0 209 78.0
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 7.6e-78 294.3 193 80.3
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 1.3e-77 293.5 211 77.3
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 1.3e-77 293.5 213 77.0
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 1.7e-77 293.1 212 76.9
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.2e-77 292.7 210 75.7
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 2.9e-77 292.4 198 80.3
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 2.9e-77 292.4 214 79.9
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 3.8e-77 292.0 217 75.6
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.4e-77 291.2 199 80.9
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 6.4e-77 291.2 215 75.8
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 1.1e-76 290.4 210 79.5
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 2.4e-76 289.3 207 75.4
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.4e-76 289.3 206 77.2
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 3.2e-76 288.9 202 79.7
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 3.2e-76 288.9 200 80.5
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 1.2e-75 287.0 212 75.9
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 1.6e-75 286.6 203 75.4
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 1.6e-75 286.6 212 75.9
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 1.6e-75 286.6 210 79.5
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 1.6e-75 286.6 212 74.1
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 2.1e-75 286.2 202 75.7
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 2.7e-75 285.8 202 75.7
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 2.7e-75 285.8 198 78.3
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 3.5e-75 285.4 202 80.2
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 4.6e-75 285.0 215 75.8
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 4.6e-75 285.0 200 81.5
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 6.0e-75 284.6 204 75.5
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 6.0e-75 284.6 217 73.3
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 7.8e-75 284.3 202 77.7
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 1.3e-74 283.5 199 77.9
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 1.7e-74 283.1 220 74.5
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 3.0e-74 282.3 247 67.6
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 3.9e-74 282.0 204 76.0
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 5.1e-74 281.6 206 72.8
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 5.1e-74 281.6 206 72.8
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 5.1e-74 281.6 202 77.2
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 6.6e-74 281.2 218 73.4
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 1.5e-73 280.0 221 73.8
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 2.5e-73 279.3 219 72.1
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.3e-73 278.9 206 78.2
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 4.3e-73 278.5 202 74.3
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 4.3e-73 278.5 201 78.6
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 4.3e-73 278.5 202 74.8
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 4.3e-73 278.5 202 73.8
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 9.6e-73 277.3 211 75.4
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 1.3e-72 276.9 202 75.2
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 2.1e-72 276.2 182 81.3
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.8e-72 275.8 176 83.5
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 4.8e-72 275.0 177 83.1
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 6.2e-72 274.6 210 75.7
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 8.1e-72 274.2 220 70.0
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 8.1e-72 274.2 182 80.8
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.8e-71 273.1 206 76.7
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 2.4e-71 272.7 197 75.6
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 5.3e-71 271.6 206 76.2
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 5.3e-71 271.6 220 69.5
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 6.9e-71 271.2 191 77.5
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 6.9e-71 271.2 205 72.7
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 6.9e-71 271.2 205 72.7
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 9.0e-71 270.8 174 82.8
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 2.0e-70 269.6 215 75.8
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 2.0e-70 269.6 216 74.5
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 2.6e-70 269.2 210 73.3
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 2.6e-70 269.2 216 70.4
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 2.6e-70 269.2 208 74.0
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 2.6e-70 269.2 204 76.0
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 4.4e-70 268.5 202 72.3
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 5.8e-70 268.1 209 71.8
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 5.8e-70 268.1 219 68.5
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 7.6e-70 267.7 202 72.3
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 4.9e-69 265.0 232 69.0
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 6.4e-69 264.6 202 71.8
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 6.4e-69 264.6 202 71.8
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 4.2e-68 261.9 177 79.7
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-67 260.0 210 72.9
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.6e-67 260.0 197 76.1
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.1e-67 259.6 175 82.9
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 2.3e-66 256.1 216 68.1
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 3.0e-66 255.8 168 81.0
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 3.0e-66 255.8 185 78.4
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.1e-65 253.8 212 67.0
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 1.5e-65 253.4 224 64.7
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 1.9e-65 253.1 198 71.7
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 1.3e-64 250.4 216 66.2
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 2.1e-64 249.6 210 65.7
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 6.2e-64 248.1 215 69.3
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 8.1e-64 247.7 176 78.4
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.1e-63 245.7 168 80.4
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 4.0e-63 245.4 199 67.3
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 6.9e-63 244.6 196 73.5
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 7.6e-62 241.1 215 64.2
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 7.6e-62 241.1 327 49.2
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 7.6e-62 241.1 170 80.6
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 6.4e-61 238.0 173 76.9
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 7.1e-60 234.6 210 62.9
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 1.2e-59 233.8 170 75.3
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 2.1e-59 233.0 168 78.0
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.0e-58 230.7 228 61.8
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 9.6e-57 224.2 193 62.7
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 6.9e-55 218.0 213 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 9.0e-55 217.6 209 59.3
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 1.2e-54 217.2 141 83.0
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.2e-53 213.0 151 76.8
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.5e-53 211.5 197 66.5
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 6.0e-51 204.9 134 83.6
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 2.2e-45 186.4 183 57.9
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 6.5e-45 184.9 178 56.7
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-44 184.1 296 44.6
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 3.2e-44 182.6 132 78.8
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 3.2e-44 182.6 132 78.8
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.1e-36 157.5 103 84.5
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 8.2e-32 141.4 103 78.6
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.8e-31 140.2 213 46.5
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 1.0e-29 134.4 188 42.0
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 5.0e-29 132.1 89 80.9
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 9.4e-28 127.9 85 78.8
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 2.1e-27 126.7 146 54.8
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 3.9e-26 122.5 85 72.9
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 2.9e-21 106.3 86 69.8
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 3.2e-20 102.8 87 65.5
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 7.2e-20 101.7 73 72.6
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 1.8e-18 97.1 211 33.6
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 5.7e-17 92.0 202 32.7
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 9.7e-17 91.3 149 36.9
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 2.4e-15 86.7 127 46.5
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 3.1e-15 86.3 170 37.1
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 4.1e-15 85.9 127 46.5
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 3.5e-14 82.8 118 41.5
AagrBONN_evm.TU.Sc2ySwM_344.1025 Anthoceros agrestis HOM05D004285 ORTHO05D005176 9.4e-12 74.7 85 50.6
BolC9t53867H Brassica oleracea HOM05D004285 ORTHO05D005176 6.1e-11 72.0 102 43.1
CARHR204170 Cardamine hirsuta HOM05D004285 ORTHO05D005176 4.8e-08 62.4 35 82.9
A08p30650 Brassica napus HOM05D004285 ORTHO05D005176 1.1e-07 61.2 53 62.3
Lj2g0007917 Lotus japonicus HOM05D004285 ORTHO05D236728 9.1e-07 58.2 75 46.7
A06p05780 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-06 57.4 58 53.4
Zm00001eb061610 Zea mays HOM05D001726 ORTHO05D001761 2.0e-06 57.0 169 30.2
Zm00001eb358220 Zea mays HOM05D001726 ORTHO05D001761 2.0e-06 57.0 169 30.2
A06p32110 Brassica napus HOM05D004285 ORTHO05D005176 2.7e-06 56.6 58 53.4
Zm00001eb162120 Zea mays HOM05D001726 ORTHO05D001761 2.7e-06 56.6 169 30.2
Nitab4.5_0000012g0320 Nicotiana tabacum HOM05D001726 ORTHO05D001761 5.9e-06 55.5 197 26.9
CBR_g44400 Chara braunii HOM05D001726 ORTHO05D001761 7.7e-06 55.1 195 28.7
Os09g0267600 Oryza sativa ssp. japonica HOM05D001726 ORTHO05D001761 7.7e-06 55.1 208 28.8


User provided reference genes

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