Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1475.7 744 100.0
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1466.1 744 99.2
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1369.0 745 91.7
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1365.1 743 91.9
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1362.8 740 91.5
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1360.9 740 92.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1357.0 739 90.9
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1356.7 766 89.0
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1356.7 740 90.9
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1356.3 739 90.4
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1355.1 740 91.6
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1354.7 739 90.5
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1352.0 740 90.5
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1351.7 739 89.9
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1350.5 740 91.4
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1349.0 737 90.8
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1348.6 744 90.1
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1347.8 739 90.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1347.4 739 90.4
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1347.0 740 90.3
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1345.9 739 89.7
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1345.9 740 90.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1343.9 738 90.4
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1343.6 739 89.6
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1343.2 739 89.9
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1342.0 738 90.2
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1341.6 739 89.9
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1341.3 739 89.7
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1340.9 739 89.9
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1339.7 737 90.0
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1338.2 740 90.0
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1335.9 739 88.5
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1335.5 740 89.7
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 739 88.8
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 746 89.0
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1333.5 739 88.6
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1333.2 739 88.8
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1332.4 740 89.9
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1330.9 739 88.8
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 740 88.8
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 739 88.4
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 739 88.8
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1325.8 739 89.3
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 740 88.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 739 88.9
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1323.5 738 88.2
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 745 88.9
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1321.6 740 88.4
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 739 87.8
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 740 88.4
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1320.4 761 87.5
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1320.4 761 87.5
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 87.6
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 739 88.2
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1319.3 741 87.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 733 89.1
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 737 87.9
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 740 88.9
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 740 88.5
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 739 88.1
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 744 87.5
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 739 87.8
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 743 87.1
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 739 88.1
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 739 87.7
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 742 87.9
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 740 87.7
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 740 88.0
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 739 87.0
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 740 87.3
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 739 87.7
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 740 87.3
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 740 87.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 739 87.8
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 738 86.9
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1303.9 739 88.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 739 87.3
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 741 88.4
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 740 87.0
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 742 87.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 740 88.5
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 740 86.9
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1301.2 740 87.2
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 740 86.9
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 740 86.6
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 740 87.0
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 740 87.6
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 739 87.0
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 739 87.1
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 740 86.9
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 740 86.6
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 740 86.5
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 741 87.2
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 741 86.9
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 740 86.8
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 741 86.4
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 709 90.6
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 739 86.1
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 820 80.2
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 705 90.1
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 742 85.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 735 86.3
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 805 80.5
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1276.2 739 85.1
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1272.3 745 84.8
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 755 84.1
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 729 87.0
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 771 82.5
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1243.4 708 88.1
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 704 87.1
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1238.0 736 85.5
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1238.0 739 84.7
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1236.5 673 91.8
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1232.6 740 82.4
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1232.2 743 82.4
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1214.1 668 88.9
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1211.4 745 81.2
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1207.6 745 80.5
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1194.5 747 81.5
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1153.3 616 91.7
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1134.8 631 88.3
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1130.5 740 76.4
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1128.6 687 80.5
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1124.4 742 74.9
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1097.8 743 73.5
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1075.8 746 72.1
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 4.1e-296 1021.1 626 80.0
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.8e-243 846.3 667 63.1
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 3.6e-231 805.4 700 59.3
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 9.7e-229 797.3 540 77.6
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 2.0e-218 763.1 648 61.6
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.2e-213 747.3 523 74.2
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 7.2e-208 728.0 453 81.0
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.6e-207 725.7 740 56.1
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 6.8e-206 721.5 466 78.5
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.8e-206 721.5 738 55.8
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.6e-135 487.6 433 61.7
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 8.2e-135 485.3 263 89.7
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 6.3e-95 352.8 216 83.8
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.0e-81 308.9 578 36.7
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-75 287.7 152 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 1.2e-72 278.9 143 94.4
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.3e-60 238.8 170 73.5
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 9.0e-41 172.9 294 37.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.7e-39 168.7 84 94.0
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.0e-37 160.2 98 77.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 6.6e-36 156.8 80 92.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 3.3e-27 127.9 72 83.3
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.6e-27 126.3 80 76.2
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 3.1e-25 121.3 71 83.1
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.2e-24 119.4 69 78.3
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.9e-22 112.1 70 77.1
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.5e-21 107.8 108 56.5
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 3.5e-21 107.8 85 63.5
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.5e-19 102.4 222 35.1
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 4.3e-19 100.9 85 61.2
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.3e-18 99.4 73 72.6
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.8e-18 98.2 75 68.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.4e-17 95.1 75 65.3
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.6e-16 91.7 67 71.6
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.9e-14 85.5 47 87.2
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 3.6e-13 81.3 49 87.8
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.8e-12 79.0 61 62.3
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 5.7e-11 73.9 47 74.5
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.6e-10 72.4 145 33.8
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.2e-10 72.0 46 73.9
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.8e-10 71.6 45 75.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 4.8e-10 70.9 43 72.1
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 8.2e-10 70.1 40 82.5
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 5.9e-08 63.9 33 87.9


User provided reference genes

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