Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 7.2e-40 166.8 83 100.0
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 7.2e-40 166.8 83 100.0
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.2e-40 166.8 83 100.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-39 166.0 83 97.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-39 166.0 83 97.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 3.3e-37 157.9 83 91.6
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 4.3e-37 157.5 83 91.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 4.3e-37 157.5 83 90.4
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 5.7e-37 157.1 83 90.4
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.7e-37 157.1 83 90.4
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 7.4e-37 156.8 83 90.4
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 9.7e-37 156.4 83 90.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.3e-36 156.0 83 90.4
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.3e-36 156.0 83 89.2
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.3e-36 156.0 83 89.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-36 156.0 83 90.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.7e-36 155.6 83 89.2
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.7e-36 155.6 83 89.2
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.7e-36 155.6 83 89.2
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.7e-36 155.6 83 89.2
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 86.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 86.7
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 90.4
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 89.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 89.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 88.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 89.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 89.2
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.2e-36 155.2 83 89.2
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.8e-36 154.8 83 89.2
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.8e-36 154.8 83 88.0
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.7e-36 154.5 83 86.7
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 4.8e-36 154.1 83 88.0
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.8e-36 154.1 83 86.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 6.3e-36 153.7 83 88.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 6.3e-36 153.7 83 88.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.4e-35 152.5 83 84.3
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.4e-35 152.5 83 88.0
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.8e-35 152.1 83 84.3
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 2.4e-35 151.8 83 88.0
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.4e-35 151.8 83 86.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 3.1e-35 151.4 83 85.5
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.1e-35 151.4 83 84.3
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 3.1e-35 151.4 83 84.3
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 3.1e-35 151.4 83 84.3
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.1e-35 151.4 83 84.3
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.1e-35 151.4 83 84.3
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.1e-35 151.0 83 83.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.1e-35 151.0 83 83.1
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.1e-35 151.0 83 85.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.1e-35 151.0 83 86.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 4.1e-35 151.0 83 84.3
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 4.1e-35 151.0 83 84.3
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 5.3e-35 150.6 83 86.7
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.9e-35 150.2 83 86.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 9.1e-35 149.8 83 83.1
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.2e-34 149.4 83 85.5
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.5e-34 149.1 83 81.9
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.5e-34 149.1 83 83.1
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.5e-34 149.1 83 86.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 80.7
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 81.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 81.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 81.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 85.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.0e-34 148.7 83 81.9
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.6e-34 148.3 83 84.3
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.6e-34 148.3 83 84.3
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.6e-34 148.3 83 84.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.6e-34 148.3 83 85.5
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 3.4e-34 147.9 83 83.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 84.3
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 84.3
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 84.3
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 81.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 81.9
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 84.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 83.1
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 4.5e-34 147.5 83 85.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 5.9e-34 147.1 83 84.3
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 7.7e-34 146.7 83 83.1
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.0e-33 146.4 83 85.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.3e-33 146.0 83 81.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.3e-33 146.0 85 83.5
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.3e-33 146.0 85 82.4
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.7e-33 145.6 83 83.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.8e-33 144.4 83 80.7
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 5.0e-33 144.1 83 81.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 6.5e-33 143.7 83 81.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 8.5e-33 143.3 83 83.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 8.5e-33 143.3 83 80.7
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.4e-32 142.5 83 79.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.9e-32 142.1 83 78.3
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 4.2e-32 141.0 82 79.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-31 139.4 95 73.7
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-31 139.4 95 73.7
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-31 139.4 95 73.7
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-31 137.5 83 79.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.7e-31 137.5 83 77.1
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.9e-31 136.7 83 75.9
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.9e-31 136.7 83 75.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-30 135.6 83 78.3
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.3e-30 135.2 83 77.1
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.5e-29 132.5 83 72.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 3.3e-29 131.3 85 75.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 9.1e-27 123.2 83 72.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.0e-22 108.2 61 82.0
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.0e-21 105.5 61 80.3
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.0e-19 97.1 61 75.4
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-18 95.9 53 86.8
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.9e-18 94.0 53 84.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 3.8e-17 91.3 83 50.6
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-16 89.0 56 78.6
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-16 87.0 84 59.5
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 9.4e-16 86.7 83 54.2
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 9.8e-13 76.6 56 71.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.8e-12 75.1 46 71.7
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-11 72.4 74 55.4
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-11 72.0 58 62.1
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 8.5e-09 63.5 56 62.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.5e-08 62.0 30 96.7
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.3e-06 55.5 30 83.3


User provided reference genes

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