Gene: Solyc07g039210.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g039210.4
  • Transcript Identifier Solyc07g039210.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 45393107-45398741 : negative

Gene Family Information

  • ID HOM05D004528
  • #Genes/#Species 159/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g039210.4.1
  • uniprot A0A3Q7I4U8
  • gene_id Solyc07g039210

Descriptions

  • Description PCI domain-containing protein (AHRD V3.3 *** A0A1Q3BJZ6_CEPFO)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016973
IBA
IEA
GOA Databasepoly(A)+ mRNA export from nucleus
GO:0016973
IEA
InterPropoly(A)+ mRNA export from nucleus
GO:0000973
IBA
GOA Databaseposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter
GO:0071033
IBA
GOA Databasenuclear retention of pre-mRNA at the site of transcription
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT2G19560
GO:0009873
ISO
PLAZA Integrative Orthologyethylene-activated signaling pathway AT2G19560
GO:0060968
ISO
PLAZA Integrative Orthologyregulation of gene silencing AT2G19560
GO:0009723
ISO
PLAZA Integrative Orthologyresponse to ethylene AT2G19560

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003690
IBA
GOA Databasedouble-stranded DNA binding
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G19560

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070390
IBA
GOA Databasetranscription export complex 2
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G19560

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000717 Proteasome component (PCI) domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR045114 Csn12 family
Mapman id Description
16.10.2.2 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX-2 mRNP trafficking complex.component PCID2/Thp1