Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.D50IR8 Arachis hypogaea HOM05D000228 ORTHO05D013010 4.8e-34 147.1 68 100.0
arahy.Tifrunner.gnm1.ann1.K7S8RA Arachis hypogaea HOM05D000228 ORTHO05D013010 6.5e-23 110.2 71 80.3
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 2.3e-20 101.7 69 73.9
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 2.3e-20 101.7 69 73.9
arahy.Tifrunner.gnm1.ann1.RLQ4ZH Arachis hypogaea HOM05D000228 ORTHO05D013010 1.3e-18 95.9 68 69.1
arahy.Tifrunner.gnm1.ann1.08AYB8 Arachis hypogaea HOM05D000228 ORTHO05D013010 1.4e-17 92.4 86 55.8
arahy.Tifrunner.gnm1.ann1.YWW8G9 Arachis hypogaea HOM05D000228 ORTHO05D013010 9.1e-17 89.7 82 59.8
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 3.8e-15 84.3 69 65.2
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 1.9e-14 82.0 69 63.8
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 3.2e-14 81.3 67 61.2
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 3.2e-14 81.3 67 62.7
arahy.Tifrunner.gnm1.ann1.ACP38X Arachis hypogaea HOM05D031798 ORTHO05D013010 5.5e-14 80.5 65 63.1
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 5.5e-14 80.5 67 56.7
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 5.5e-14 80.5 67 56.7
TPR.G33168 Trifolium pratense HOM05D000228 ORTHO05D013010 1.6e-13 79.0 67 59.7
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 2.7e-13 78.2 67 55.2
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 3.6e-13 77.8 67 53.7
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 4.7e-13 77.4 66 57.6
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 4.7e-13 77.4 67 59.7
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 8.0e-13 76.6 58 60.3
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 1.0e-12 76.3 66 59.1
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 1.8e-12 75.5 67 53.7
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 4.0e-12 74.3 61 60.7
CiPaw.12G099100 Carya illinoinensis HOM05D000228 ORTHO05D013010 5.2e-12 73.9 61 57.4
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 5.2e-12 73.9 67 53.7
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 5.2e-12 73.9 66 59.1
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 5.2e-12 73.9 61 59.0
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 6.8e-12 73.6 66 59.1
Lalb_Chr05g0225101 Lupinus albus HOM05D000228 ORTHO05D013010 6.8e-12 73.6 67 59.7
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 6.8e-12 73.6 67 53.7
SHI01912 Sapria himalayana HOM05D000228 ORTHO05D006129 8.8e-12 73.2 66 53.0
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 1.2e-11 72.8 67 58.2
PSO782G2782 Papaver somniferum HOM05D000228 ORTHO05D006129 1.2e-11 72.8 63 54.0
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 1.5e-11 72.4 60 56.7
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 2.0e-11 72.0 67 52.2
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 2.0e-11 72.0 67 52.2
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 2.0e-11 72.0 67 52.2
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 2.6e-11 71.6 67 52.2
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 2.6e-11 71.6 58 60.3
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 4.4e-11 70.9 58 62.1
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 4.4e-11 70.9 67 50.7
PSO478G3868 Papaver somniferum HOM05D000228 ORTHO05D006129 5.7e-11 70.5 63 52.4
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 5.7e-11 70.5 67 55.2
arahy.Tifrunner.gnm1.ann1.6SF4HQ Arachis hypogaea HOM05D000228 ORTHO05D013010 9.8e-11 69.7 37 91.9
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 1.3e-10 69.3 58 56.9
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 1.3e-10 69.3 65 53.8
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 1.7e-10 68.9 61 55.7
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 2.2e-10 68.6 61 50.8
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 2.8e-10 68.2 66 54.5
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 2.8e-10 68.2 60 53.3
Hund11530 Selenicereus undatus HOM05D000228 ORTHO05D006129 2.8e-10 68.2 60 55.0
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 2.8e-10 68.2 61 54.1
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 3.7e-10 67.8 58 58.6
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 3.7e-10 67.8 61 50.8
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 3.7e-10 67.8 59 55.9
Lj2C197T6 Lonicera japonica HOM05D000228 ORTHO05D006129 4.8e-10 67.4 60 51.7
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 4.8e-10 67.4 60 53.3
Gohir.A11G021201 Gossypium hirsutum HOM05D000228 ORTHO05D013010 6.3e-10 67.0 67 50.7
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 6.3e-10 67.0 58 53.4
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 8.3e-10 66.6 60 50.0
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 8.3e-10 66.6 59 52.5
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 8.3e-10 66.6 61 54.1
Hma1.2p1_0138F.1_g062630 Hydrangea macrophylla HOM05D000228 ORTHO05D006129 1.1e-09 66.2 60 55.0
AUR62017301 Chenopodium quinoa HOM05D000228 ORTHO05D006129 1.4e-09 65.9 60 51.7
TAR636G2974 Trochodendron aralioides HOM05D000228 ORTHO05D006129 1.4e-09 65.9 61 52.5
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 1.4e-09 65.9 58 51.7
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 1.8e-09 65.5 60 51.7
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 2.4e-09 65.1 59 54.2
arahy.Tifrunner.gnm1.ann1.HG0937 Arachis hypogaea HOM05D000228 ORTHO05D013010 3.1e-09 64.7 59 66.1
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 3.1e-09 64.7 60 50.0
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 3.1e-09 64.7 60 51.7
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 4.1e-09 64.3 75 45.3
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 4.1e-09 64.3 57 54.4
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 7.0e-09 63.5 60 50.0
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 7.0e-09 63.5 60 50.0
Nn6g34281 Nelumbo nucifera HOM05D000228 ORTHO05D006129 9.1e-09 63.2 61 45.9
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 1.2e-08 62.8 66 47.0
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 1.6e-08 62.4 65 47.7
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.6e-08 62.4 65 47.7
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.6e-08 62.4 65 47.7
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 1.6e-08 62.4 65 47.7
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 2.7e-08 61.6 64 48.4
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 5.9e-08 60.5 60 48.3
Os09g0555200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 7.7e-08 60.1 59 40.7
CAN.G981.46 Capsicum annuum HOM05D000228 ORTHO05D006129 1.0e-07 59.7 57 50.9
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 1.3e-07 59.3 65 49.2
AL2G12580 Arabidopsis lyrata HOM05D000228 ORTHO05D006129 1.7e-07 58.9 66 48.5
AT1G63020 Arabidopsis thaliana HOM05D000228 ORTHO05D006129 2.3e-07 58.5 66 48.5
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 2.3e-07 58.5 65 47.7
Oeu062351.1 Olea europaea HOM05D000228 ORTHO05D006129 2.3e-07 58.5 65 50.8
Thhalv10023214m.g Eutrema salsugineum HOM05D000228 ORTHO05D006129 2.9e-07 58.2 66 43.9
HPP92_014991 Vanilla planifolia HOM05D000228 ORTHO05D013010 1.1e-06 56.2 60 40.0
Aa31LG2G520 Aethionema arabicum HOM05D000228 ORTHO05D006129 3.3e-06 54.7 66 43.9
Carub.0002s0198 Capsella rubella HOM05D000228 ORTHO05D006129 3.3e-06 54.7 65 44.6
unitig_22.g5477 Utricularia gibba HOM05D000228 ORTHO05D006129 5.5e-06 53.9 65 46.2
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 7.2e-06 53.5 61 44.3
Os04g0572600 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 7.2e-06 53.5 59 39.0
Sp2g01560 Schrenkiella parvula HOM05D000228 ORTHO05D006129 7.2e-06 53.5 66 43.9
BcaC06g31930 Brassica carinata HOM05D000228 ORTHO05D006129 9.5e-06 53.1 66 42.4
CARHR048610 Cardamine hirsuta HOM05D000228 ORTHO05D013010 9.5e-06 53.1 66 43.9


User provided reference genes

Program Settings