Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1796.2 958 100.0
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1796.2 958 100.0
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1549.6 960 83.4
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1540.8 987 82.1
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1536.9 991 81.6
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1519.6 988 80.8
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1503.0 1044 76.4
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1500.0 988 80.8
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1350.9 978 74.2
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1340.1 1038 70.7
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1321.2 992 71.5
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1316.6 1031 69.6
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1316.2 992 73.1
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1313.9 992 71.7
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1310.8 1028 69.4
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1307.7 977 73.5
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1306.2 982 71.8
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1305.4 997 71.1
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1305.0 1024 69.5
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1303.5 991 71.1
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1299.3 1006 70.9
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1297.7 1000 70.9
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1294.3 966 73.5
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1293.1 1069 67.4
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1291.9 1049 69.2
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1291.6 1048 69.3
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1289.2 995 69.4
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1285.0 984 70.3
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1282.7 994 69.4
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1280.4 990 69.7
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1272.3 987 71.0
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1270.4 977 69.1
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1267.3 974 71.7
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1266.9 998 68.7
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 1052 67.4
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1263.1 975 71.4
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1262.7 972 68.9
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1262.7 987 69.4
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 970 69.1
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 979 69.3
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1261.1 965 69.4
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1260.4 963 68.5
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1260.4 963 68.5
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1260.4 963 68.5
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1259.6 974 68.4
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1259.2 967 69.9
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1258.0 965 69.5
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1257.3 979 68.2
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1256.5 972 68.6
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1255.7 990 70.4
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1255.7 969 69.7
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1253.8 970 69.0
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1252.3 977 68.1
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1250.3 1019 67.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1248.8 988 68.2
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1248.8 973 68.0
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1247.6 979 68.3
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1246.5 969 68.0
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 1045 66.6
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1243.4 968 69.6
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1242.3 969 68.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1241.5 970 69.5
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 979 67.1
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1239.6 975 68.5
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1230.7 977 66.8
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 1036 64.6
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1227.6 980 67.9
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1224.5 1044 65.1
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1218.8 990 66.7
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 983 67.0
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1206.4 1163 59.2
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1203.7 979 67.3
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1202.6 981 65.9
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1202.2 1013 65.1
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1201.8 981 65.6
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 993 66.7
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1193.3 984 66.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1135.9 975 62.8
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1126.3 905 69.0
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1124.4 825 73.1
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1124.0 968 64.2
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1122.5 992 63.2
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 0.0e+00 1114.8 989 63.2
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1102.0 832 71.4
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1098.2 1000 58.3
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1093.2 998 59.5
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1077.0 1001 60.2
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1075.5 849 69.6
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 5.0e-310 1067.8 891 67.8
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 3.0e-283 978.8 987 57.2
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 6.3e-281 971.1 958 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.2e-277 958.4 1004 53.6
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 2.3e-270 936.0 1066 49.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 2.2e-265 919.5 978 54.0
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 5.4e-264 914.8 1056 49.4
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 5.8e-258 894.8 597 79.7
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.7e-246 856.7 763 63.4
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 7.1e-232 808.1 678 65.6
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.8e-214 750.4 712 59.0
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 1.5e-210 737.3 786 56.1
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 5.1e-206 722.2 605 65.1
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 2.4e-203 713.4 550 71.6
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 5.3e-203 712.2 928 48.7
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 5.0e-169 599.4 555 59.5
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.8e-158 564.3 964 35.8
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 2.8e-135 487.3 397 65.0
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 8.9e-134 482.3 358 66.8
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 7.0e-131 472.6 277 87.0
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.8e-125 453.0 305 70.8
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.7e-124 451.4 263 85.9
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 7.1e-123 446.0 975 32.4
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.7e-122 444.1 278 79.5
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.3e-120 436.0 350 63.4
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 3.6e-119 433.7 292 76.7
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 7.1e-107 392.9 1294 29.1
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.1e-106 391.3 340 61.5
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 1.3e-105 388.7 913 32.4
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 2.3e-97 361.3 222 81.5
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.4e-94 351.3 352 52.6
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.5e-82 310.8 290 55.5
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 7.4e-80 303.1 168 88.1
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.1e-78 299.3 181 81.2
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.4e-70 272.3 244 60.2
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.4e-70 271.6 185 71.4
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 6.9e-70 270.0 145 93.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 7.2e-59 233.4 150 78.7
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.8e-57 226.5 144 73.6
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.4e-56 223.4 186 64.0
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.8e-49 202.2 214 57.0
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 4.0e-49 201.1 105 95.2
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.0e-49 201.1 129 72.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 1.2e-48 199.5 211 56.4
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-47 194.9 129 70.5
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 5.4e-46 190.7 161 64.6
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-44 186.0 131 68.7
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 4.2e-43 181.0 98 90.8
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 7.2e-43 180.3 203 55.2
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 5.7e-40 170.6 123 73.2
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.1e-34 152.1 109 69.7
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.3e-28 132.9 85 72.9
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 9.5e-27 126.7 139 54.0
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 4.7e-26 124.4 85 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 9.2e-22 110.2 175 40.0
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.7e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 1.1e-09 70.1 45 80.0
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 3.2e-06 58.5 59 47.5


User provided reference genes

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