Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 0.0e+00 1177.9 603 100.0
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 0.0e+00 1093.2 603 94.7
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.2e-258 896.3 606 78.2
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.3e-252 876.3 605 76.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 3.9e-252 874.8 608 77.8
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.4e-249 866.3 581 78.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 8.9e-249 863.6 604 77.0
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 8.9e-249 863.6 606 74.9
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 7.1e-246 854.0 610 74.9
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 9.2e-246 853.6 604 75.5
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.1e-242 842.4 607 74.3
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.7e-237 825.5 513 82.5
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.0e-236 823.5 599 72.1
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.1e-236 821.2 608 72.5
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.6e-235 817.8 603 71.1
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 6.2e-234 814.3 609 72.4
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 6.9e-233 810.8 584 72.6
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.5e-232 808.1 607 71.7
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-231 806.6 614 69.7
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.2e-231 805.8 605 72.2
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.2e-231 805.8 605 72.2
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 3.8e-231 805.1 608 70.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 6.4e-231 804.3 606 71.0
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.2e-229 800.0 541 75.2
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.2e-229 800.0 570 72.3
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.2e-229 800.0 616 70.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.7e-229 798.9 561 72.7
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.7e-229 798.9 545 75.0
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.3e-228 795.8 541 76.2
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.0e-228 795.4 609 70.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 3.9e-228 795.0 605 70.7
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.7e-228 793.9 577 74.0
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.9e-227 792.7 571 73.6
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.9e-227 792.7 596 70.1
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.3e-226 790.0 566 72.3
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.7e-226 788.5 619 68.0
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.1e-225 786.9 642 65.9
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 6.9e-225 784.3 516 76.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 2.0e-224 782.7 578 72.1
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.2e-223 779.2 595 69.6
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 6.4e-223 777.7 605 68.8
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.4e-223 777.7 586 71.8
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 3.2e-222 775.4 575 71.0
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 5.5e-222 774.6 547 74.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.5e-222 774.6 606 68.3
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.2e-221 773.5 609 69.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.2e-221 773.5 585 70.6
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-221 773.5 600 68.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 6.0e-221 771.2 523 74.2
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.0e-220 770.4 571 70.8
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.1e-219 766.9 567 70.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.1e-219 766.9 575 71.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.3e-218 763.5 574 70.4
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 4.8e-218 761.5 590 68.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.8e-217 759.6 612 67.2
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.4e-217 759.2 532 72.7
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 4.0e-217 758.4 559 70.7
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.6e-216 755.7 584 68.3
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 3.4e-216 755.4 545 71.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 3.4e-216 755.4 545 71.2
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.0e-215 753.8 565 70.8
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.3e-215 753.4 606 67.5
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.7e-215 753.1 607 67.1
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.2e-215 752.7 584 68.3
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 2.9e-215 752.3 607 67.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 4.9e-215 751.5 545 70.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 6.5e-215 751.1 556 70.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.5e-215 751.1 511 75.3
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-214 749.6 637 64.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 3.2e-214 748.8 607 67.1
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.2e-214 748.4 673 62.3
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 5.5e-214 748.0 603 66.7
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.7e-213 745.7 604 65.9
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.3e-212 742.7 604 66.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 3.9e-212 741.9 550 71.1
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 8.7e-212 740.7 603 66.3
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.3e-211 738.8 598 66.9
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.7e-211 738.0 511 73.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 5.7e-211 738.0 561 69.9
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.7e-210 735.3 600 66.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.0e-208 729.6 547 70.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.0e-208 729.6 589 67.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-206 723.8 590 64.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.3e-203 712.2 571 65.3
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 2.2e-202 709.5 547 66.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 8.2e-202 707.6 658 61.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.4e-201 706.8 594 64.1
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 4.5e-200 701.8 516 70.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.2e-199 699.5 490 76.9
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 3.8e-199 698.7 605 64.1
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.1e-198 697.2 535 68.6
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.6e-197 693.3 468 76.9
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.5e-195 686.8 553 66.0
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 5.9e-192 674.9 614 63.4
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 5.0e-191 671.8 516 69.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 5.5e-190 668.3 586 62.1
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 6.1e-189 664.8 646 59.1
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 8.0e-189 664.5 466 72.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.7e-188 661.4 614 59.9
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.1e-185 652.1 529 63.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.0e-180 636.0 612 60.5
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-167 594.3 446 69.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.9e-166 590.1 565 58.1
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.1e-165 586.6 538 60.0
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.4e-164 583.9 399 75.7
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-161 573.5 472 61.4
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.4e-140 504.2 519 54.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.5e-134 484.2 440 55.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 5.6e-134 482.3 352 71.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 5.2e-132 475.7 500 52.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 8.9e-132 474.9 409 67.7
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.7e-127 460.7 455 52.1
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.6e-125 453.0 454 56.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 4.8e-125 452.6 494 49.4
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.0e-123 447.2 266 84.6
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.4e-121 440.3 516 51.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.7e-119 431.8 466 55.8
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 5.6e-118 429.1 359 65.7
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.2e-104 384.8 490 44.3
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.9e-89 334.3 282 56.7
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 9.1e-84 315.5 204 74.5
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.8e-74 283.5 260 58.8
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.0e-71 275.4 173 77.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 7.5e-70 269.2 202 63.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.2e-69 267.7 278 55.0
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.7e-66 258.1 233 64.8
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.7e-64 250.8 262 47.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.3e-63 247.7 407 38.8
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.7e-62 243.0 176 68.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.5e-58 229.6 293 49.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.5e-57 227.6 291 44.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.2e-57 226.1 177 68.9
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.7e-56 224.2 129 84.5
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 5.6e-49 199.9 113 85.0
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.0e-46 191.4 128 68.8
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.0e-42 177.6 272 39.7
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.3e-37 162.2 139 62.6
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.3e-34 152.1 124 62.9
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.1e-33 149.1 269 34.9
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 4.3e-33 147.1 106 69.8
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 3.4e-30 137.5 83 75.9
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 6.0e-27 126.7 201 40.8
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.0e-26 125.9 95 69.5
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.9e-25 121.7 269 35.7
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.8e-24 117.9 112 54.5
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.2e-23 113.6 235 37.9
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 4.1e-20 104.0 77 67.5
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 6.0e-19 100.1 71 69.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.3e-18 99.0 56 85.7
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.3e-18 98.2 71 67.6
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 8.6e-18 96.3 57 86.0
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.9e-17 95.1 96 47.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-16 92.4 91 48.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.4e-14 84.3 55 74.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.9e-14 82.8 249 27.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 5.1e-10 70.5 59 59.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.3e-08 65.9 109 35.8
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 4.8e-08 63.9 36 83.3
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 8.1e-08 63.2 284 22.9
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.1e-08 63.2 40 80.0
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 7.6e-06 56.6 52 51.9


User provided reference genes

Program Settings