Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 8.4e-28 126.3 65 100.0
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 8.7e-17 89.7 93 58.1
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-16 89.0 93 57.0
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.4e-14 82.4 93 51.6
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-13 79.0 93 49.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.6e-13 78.2 93 48.4
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 4.5e-13 77.4 93 48.4
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 7.6e-13 76.6 93 46.2
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.7e-12 75.5 93 48.4
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.7e-12 75.5 93 46.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.7e-12 75.5 93 46.2
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.2e-12 75.1 93 46.2
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.2e-12 75.1 93 47.3
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.9e-12 74.7 93 45.2
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 2.9e-12 74.7 93 47.3
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.8e-12 74.3 93 48.4
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.8e-12 74.3 93 47.3
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.8e-12 74.3 93 47.3
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.8e-12 74.3 93 47.3
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.8e-12 74.3 93 47.3
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.0e-12 73.9 93 47.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 6.5e-12 73.6 93 45.2
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 6.5e-12 73.6 93 45.2
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.5e-12 73.6 93 46.2
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 6.5e-12 73.6 93 46.2
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 8.4e-12 73.2 93 46.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 8.4e-12 73.2 93 44.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.4e-11 72.4 93 45.2
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.4e-11 72.4 93 44.1
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.4e-11 72.4 93 46.2
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.4e-11 72.4 93 47.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.4e-11 72.4 93 46.2
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.9e-11 72.0 93 45.2
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.5e-11 71.6 93 46.2
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 3.2e-11 71.2 93 46.2
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.2e-11 71.2 93 45.2
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.2e-11 71.2 93 45.2
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.2e-11 70.9 93 45.2
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.2e-11 70.9 93 45.2
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 4.2e-11 70.9 93 45.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.2e-11 70.9 93 46.2
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 5.5e-11 70.5 93 45.2
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 5.5e-11 70.5 93 45.2
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 5.5e-11 70.5 93 44.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 45.2
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 45.2
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 45.2
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 45.2
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 45.2
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 45.2
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 7.2e-11 70.1 93 46.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.2e-11 70.1 92 44.6
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 9.3e-11 69.7 93 44.1
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.2e-10 69.3 88 45.5
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.2e-10 69.3 93 43.0
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.6e-10 68.9 93 43.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.6e-10 68.9 93 45.2
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.1e-10 68.6 93 46.2
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.7e-10 68.2 93 44.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.7e-10 68.2 92 43.5
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.7e-10 68.2 93 45.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.7e-10 68.2 93 43.0
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.5e-10 67.8 93 43.0
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.5e-10 67.8 88 43.2
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 3.5e-10 67.8 93 43.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 3.5e-10 67.8 93 43.0
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 4.6e-10 67.4 90 45.6
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 4.6e-10 67.4 93 43.0
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 7.9e-10 66.6 93 44.1
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.9e-10 66.6 93 40.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 7.9e-10 66.6 88 44.3
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.0e-09 66.2 93 43.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.0e-09 66.2 93 41.9
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.0e-09 66.2 93 43.0
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.0e-09 66.2 93 43.0
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.0e-09 66.2 93 43.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.3e-09 65.9 93 43.0
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.3e-09 65.9 93 44.1
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.8e-09 65.5 93 41.9
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.8e-09 65.5 88 44.3
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.8e-09 65.5 88 44.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 2.3e-09 65.1 95 38.9
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 43.0
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 43.0
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 40.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 43.0
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 41.9
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 41.9
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.3e-09 65.1 93 43.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 3.0e-09 64.7 93 40.9
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 3.0e-09 64.7 88 45.5
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 3.0e-09 64.7 93 41.9
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.9e-09 64.3 93 41.9
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.9e-09 64.3 93 41.9
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.9e-09 64.3 93 41.9
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.1e-09 63.9 93 41.9
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.1e-09 63.9 93 41.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 5.1e-09 63.9 93 40.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 5.1e-09 63.9 93 41.9
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 6.7e-09 63.5 88 40.9
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 43.0
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 41.9
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 39.8
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 8.7e-09 63.2 90 43.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 41.9
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 40.9
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 39.8
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 8.7e-09 63.2 93 38.7
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.1e-08 62.8 93 41.9
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.5e-08 62.4 93 40.9
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-08 62.4 93 41.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.5e-08 62.4 93 41.9
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.5e-08 62.4 93 41.9
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.5e-08 62.4 93 41.9
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.5e-08 62.4 88 42.0
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.9e-08 62.0 93 39.8
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.9e-08 62.0 93 39.8
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.9e-08 62.0 88 39.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.3e-08 61.2 88 42.0
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 4.3e-08 60.8 90 42.2
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 4.3e-08 60.8 90 42.2
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 4.3e-08 60.8 90 42.2
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 4.3e-08 60.8 90 42.2
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 4.3e-08 60.8 90 42.2
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 4.3e-08 60.8 93 38.7
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 5.7e-08 60.5 64 51.6
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.7e-08 59.7 45 62.2
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 9.7e-08 59.7 93 39.8
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.3e-07 59.3 64 51.6
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.3e-07 59.3 90 38.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.6e-07 58.9 64 51.6
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.6e-07 58.9 64 50.0
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.2e-07 58.5 91 39.6
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.8e-07 57.4 64 46.9
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.8e-07 57.4 64 50.0
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 6.3e-07 57.0 86 40.7
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.2e-07 56.6 64 46.9
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 8.2e-07 56.6 64 46.9
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 8.2e-07 56.6 64 46.9
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.1e-06 56.2 93 39.8
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.1e-06 56.2 64 48.4
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.4e-06 55.8 45 57.8
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.8e-06 55.5 64 45.3
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 2.4e-06 55.1 64 45.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.1e-06 54.3 64 48.4
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 9.0e-06 53.1 45 57.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 9.0e-06 53.1 45 57.8


User provided reference genes

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