Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 5.3e-122 441.0 225 100.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 1.5e-116 422.9 225 95.1
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 6.3e-115 417.5 225 94.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.5e-103 379.8 349 63.3
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.5e-100 369.8 225 81.3
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 4.9e-99 364.8 222 81.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.4e-98 363.2 222 81.1
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 4.6e-97 358.2 222 79.7
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 4.6e-97 358.2 222 80.6
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.9e-96 355.1 222 80.2
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.0e-96 354.8 222 80.6
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 6.6e-96 354.4 222 79.7
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.5e-92 343.2 222 77.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.2e-90 335.5 222 75.2
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 7.0e-90 334.3 224 75.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 2.6e-76 289.3 221 65.6
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.3e-75 287.0 222 64.0
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 5.4e-74 281.6 219 64.8
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 2.1e-73 279.6 222 63.5
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.9e-72 275.4 222 61.3
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 5.1e-72 275.0 222 61.7
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 6.6e-72 274.6 222 61.7
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.6e-71 271.6 221 59.7
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 9.6e-71 270.8 219 63.0
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.2e-70 270.4 221 62.4
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 4.7e-70 268.5 222 60.8
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 4.0e-69 265.4 222 60.4
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 4.0e-69 265.4 225 60.4
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 6.8e-69 264.6 223 61.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.8e-69 264.6 223 60.1
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.8e-69 264.6 223 60.1
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 1.5e-68 263.5 226 63.7
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.0e-68 263.1 226 60.6
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.6e-68 262.7 222 59.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.6e-68 262.7 223 60.1
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.8e-68 261.5 223 59.2
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.8e-68 261.5 223 59.2
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.8e-68 261.5 223 59.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 7.6e-68 261.2 218 60.6
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 9.9e-68 260.8 222 60.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 9.9e-68 260.8 207 64.3
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.3e-67 260.4 225 60.9
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-67 259.6 223 58.7
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-67 259.6 223 58.7
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-67 259.6 223 58.7
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.9e-67 258.5 223 58.7
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.4e-67 257.7 223 58.3
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.1e-66 257.3 214 59.8
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 7.1e-66 254.6 225 56.9
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.2e-65 253.8 222 59.9
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.6e-65 253.4 219 62.6
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.0e-64 250.8 227 58.1
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.0e-64 250.8 202 63.9
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.3e-64 250.4 225 57.8
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.3e-64 250.4 226 57.5
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.3e-64 249.6 221 58.8
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.5e-63 246.9 224 58.9
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.9e-63 246.5 167 75.4
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 3.3e-63 245.7 222 61.7
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 3.3e-63 245.7 222 59.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.8e-62 242.7 226 59.3
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.8e-62 242.7 221 57.0
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 6.2e-62 241.5 222 59.5
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 8.1e-62 241.1 222 57.2
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 8.1e-62 241.1 222 57.7
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.1e-61 240.7 225 57.8
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.4e-61 240.4 203 60.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.4e-61 240.4 225 57.8
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 2.4e-61 239.6 217 58.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 2.4e-61 239.6 222 58.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 6.9e-61 238.0 217 56.7
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 9.0e-61 237.7 222 59.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-60 237.3 217 57.1
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.6e-60 236.1 217 57.1
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 5.8e-60 235.0 218 57.3
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 5.8e-60 235.0 202 57.9
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.3e-59 233.8 202 59.4
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.3e-59 233.8 202 59.4
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.7e-59 233.4 252 50.8
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.9e-59 232.6 198 60.6
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 3.8e-59 232.3 217 56.2
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 4.9e-59 231.9 203 57.6
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.9e-59 231.9 231 53.2
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 6.4e-59 231.5 202 58.4
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 6.4e-59 231.5 189 64.6
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-58 230.7 217 55.8
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-58 230.7 217 55.8
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 3.2e-58 229.2 197 62.4
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 4.2e-58 228.8 222 55.0
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 5.4e-58 228.4 217 55.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 7.1e-58 228.0 222 57.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 9.3e-58 227.6 231 53.7
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 9.3e-58 227.6 217 55.3
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 1.2e-57 227.3 217 54.8
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.3e-56 223.8 204 60.3
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.7e-56 223.4 225 53.8
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 3.0e-56 222.6 229 55.0
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 6.6e-56 221.5 217 53.9
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 8.7e-56 221.1 199 59.8
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.1e-55 220.7 199 60.3
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.5e-55 220.3 261 52.9
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.3e-55 218.8 218 54.6
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.6e-55 218.4 230 53.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 5.6e-55 218.4 201 60.7
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.6e-55 218.4 238 54.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 5.6e-55 218.4 236 53.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.3e-54 217.2 239 53.1
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 3.1e-53 212.6 184 62.0
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.1e-53 212.6 275 49.1
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 6.9e-53 211.5 268 47.0
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.2e-52 210.7 186 62.4
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.2e-52 210.7 199 58.8
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.0e-52 209.9 204 56.9
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 3.4e-52 209.1 201 57.7
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.4e-52 209.1 260 48.8
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.7e-51 206.8 203 57.1
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-51 206.5 171 62.0
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 3.8e-51 205.7 207 55.6
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.1e-50 204.1 187 55.1
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.9e-48 195.7 216 54.2
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.1e-45 187.6 260 45.8
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.8e-44 181.8 152 63.8
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-43 180.6 152 61.2
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 2.5e-42 176.4 197 53.8
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 3.2e-42 176.0 188 54.8
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-37 161.0 156 52.6
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.4e-36 156.0 144 60.4
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.7e-35 153.7 148 58.8
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 7.2e-34 148.3 137 57.7
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 4.6e-33 145.6 184 49.5
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 6.1e-33 145.2 141 56.0
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.1e-32 142.1 128 58.6
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 1.1e-31 141.0 143 55.2
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.5e-28 130.6 101 69.3
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.4e-28 129.4 191 40.8
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 7.7e-28 128.3 135 53.3
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.1e-25 120.2 203 37.9
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 6.1e-25 118.6 124 54.8
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.0e-24 116.3 91 60.4
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.0e-24 116.3 188 39.4
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.0e-23 113.6 192 37.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 5.0e-19 99.0 94 53.2
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 2.5e-18 96.7 111 51.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 4.7e-17 92.4 98 53.1
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 6.1e-17 92.0 155 40.6
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 5.1e-16 89.0 152 38.8
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-15 87.8 68 57.4
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 1.7e-14 84.0 93 62.4
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 3.5e-12 76.3 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.7e-11 73.9 167 34.1
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 3.8e-11 72.8 50 68.0
arahy.Tifrunner.gnm1.ann1.0IPZ2W Arachis hypogaea HOM05D001355 ORTHO05D003368 5.7e-07 58.9 81 50.6
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 7.5e-07 58.5 191 30.9
arahy.Tifrunner.gnm1.ann1.C8V8ZF Arachis hypogaea HOM05D001355 ORTHO05D003368 2.8e-06 56.6 77 50.6


User provided reference genes

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