Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A8IGUR Arachis hypogaea HOM05D000361 ORTHO05D014446 1.5e-50 202.6 103 100.0
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 5.8e-23 110.9 63 90.5
arahy.Tifrunner.gnm1.ann1.YFDY0T Arachis hypogaea HOM05D000361 ORTHO05D008498 1.8e-16 89.4 80 66.2
arahy.Tifrunner.gnm1.ann1.R3IAX4 Arachis hypogaea HOM05D000361 ORTHO05D008498 9.0e-16 87.0 79 65.8
arahy.Tifrunner.gnm1.ann1.DPD6KL Arachis hypogaea HOM05D000361 ORTHO05D014446 1.2e-15 86.7 62 75.8
ClCG11G003620 Citrullus lanatus HOM05D000361 ORTHO05D008498 2.0e-15 85.9 80 63.8
CsaV3_2G003500 Cucumis sativus L. HOM05D000361 ORTHO05D008498 2.0e-15 85.9 80 63.8
Sed0027129 Sechium edule HOM05D000361 ORTHO05D008498 5.8e-15 84.3 80 62.5
MELO3C004448.2 Cucumis melo HOM05D000361 ORTHO05D008498 7.6e-15 84.0 79 63.3
Eucgr.C00405 Eucalyptus grandis HOM05D000361 ORTHO05D008498 7.6e-15 84.0 80 63.8
Sc18g0007590 Simmondsia chinensis HOM05D000361 ORTHO05D008498 1.3e-14 83.2 80 62.5
PGR142G3728 Punica granatum HOM05D000361 ORTHO05D008498 1.7e-14 82.8 80 61.2
CiPaw.15G171000 Carya illinoinensis HOM05D000361 ORTHO05D008498 2.2e-14 82.4 112 52.7
Lj4g0004865 Lotus japonicus HOM05D000361 ORTHO05D008498 2.2e-14 82.4 80 62.5
RcHm_v2.0_Chr2g0086411 Rosa chinensis HOM05D000361 ORTHO05D008498 3.8e-14 81.6 80 60.0
Glyma.13G156400 Glycine max HOM05D000361 ORTHO05D008498 4.9e-14 81.3 80 60.0
Glyma.17G104000 Glycine max HOM05D000361 ORTHO05D008498 4.9e-14 81.3 80 60.0
Phvul.003G175800 Phaseolus vulgaris HOM05D000361 ORTHO05D008498 4.9e-14 81.3 80 60.0
Nn8g39756 Nelumbo nucifera HOM05D000361 ORTHO05D008498 1.1e-13 80.1 80 61.2
FvH4_1g01490 Fragaria vesca HOM05D000361 ORTHO05D008498 1.4e-13 79.7 80 58.8
FAN19G0984 Fragaria x ananassa HOM05D000361 ORTHO05D008498 1.4e-13 79.7 80 58.8
FAN28G2637 Fragaria x ananassa HOM05D000361 ORTHO05D008498 1.4e-13 79.7 80 58.8
VMungo1215G2534 Vigna mungo HOM05D000361 ORTHO05D008498 1.4e-13 79.7 80 58.8
Prupe.7G252700 Prunus persica HOM05D000361 ORTHO05D008498 1.9e-13 79.3 80 60.0
Ca_21604_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008498 2.4e-13 79.0 80 60.0
EL10Ac8g18836 Beta vulgaris HOM05D000361 ORTHO05D008498 3.2e-13 78.6 80 60.0
CANSAT11G1655 Cannabis sativa HOM05D000361 ORTHO05D008498 3.2e-13 78.6 80 60.0
FAN26G0198 Fragaria x ananassa HOM05D000361 ORTHO05D008498 3.2e-13 78.6 80 57.5
Psat4g032920 Pisum sativum HOM05D000361 ORTHO05D008498 9.3e-13 77.0 80 58.8
SEGI_11719 Sequoiadendron giganteum HOM05D000361 ORTHO05D008498 1.2e-12 76.6 80 60.0
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 2.1e-12 75.9 112 49.1
Haze_19294 Corylus avellana HOM05D000361 ORTHO05D008498 2.1e-12 75.9 112 49.1
PSO384G4385 Papaver somniferum HOM05D000361 ORTHO05D008498 2.1e-12 75.9 80 57.5
PSO493G0003 Papaver somniferum HOM05D000361 ORTHO05D008498 2.1e-12 75.9 70 62.9
QL02p091753 Quercus lobata HOM05D000361 ORTHO05D008498 2.1e-12 75.9 80 60.0
Hma1.2p1_0028F.1_g017220 Hydrangea macrophylla HOM05D000361 ORTHO05D008498 2.7e-12 75.5 80 58.8
CAN.G520.36 Capsicum annuum HOM05D000361 ORTHO05D008498 3.5e-12 75.1 80 57.5
TWI63G1788 Tripterygium wilfordii HOM05D000361 ORTHO05D008498 3.5e-12 75.1 80 57.5
TAR625G0680 Trochodendron aralioides HOM05D000361 ORTHO05D008498 3.5e-12 75.1 80 58.8
Ciclev10007588m.g Citrus clementina HOM05D000361 ORTHO05D008498 4.6e-12 74.7 80 57.5
COL.COLO4_18724 Corchorus olitorius HOM05D000361 ORTHO05D008498 4.6e-12 74.7 80 57.5
PSO339G2602 Papaver somniferum HOM05D000361 ORTHO05D008498 4.6e-12 74.7 80 56.2
CDE12G0216 Ceratophyllum demersum HOM05D000361 ORTHO05D008498 6.0e-12 74.3 80 56.2
Lalb_Chr07g0179611 Lupinus albus HOM05D000361 ORTHO05D008498 6.0e-12 74.3 80 56.2
Sopen07g001130 Solanum pennellii HOM05D000361 ORTHO05D008498 6.0e-12 74.3 80 56.2
unitig_62.g23480 Utricularia gibba HOM05D000361 ORTHO05D008498 6.0e-12 74.3 80 56.2
Gohir.A13G185700 Gossypium hirsutum HOM05D000361 ORTHO05D008498 7.8e-12 73.9 80 56.2
Dinv23299 Davidia involucrata HOM05D000361 ORTHO05D008498 1.0e-11 73.6 80 57.5
Thecc.09G036800 Theobroma cacao HOM05D000361 ORTHO05D008498 1.0e-11 73.6 80 56.2
arahy.Tifrunner.gnm1.ann1.74QZJ8 Arachis hypogaea HOM05D003351 ORTHO05D003806 1.3e-11 73.2 44 86.4
AUR62011272 Chenopodium quinoa HOM05D000361 ORTHO05D008498 1.3e-11 73.2 80 56.2
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 1.3e-11 73.2 80 56.2
Solyc07g005020.3 Solanum lycopersicum HOM05D000361 ORTHO05D008498 1.3e-11 73.2 80 56.2
PGSC0003DMG400011837 Solanum tuberosum HOM05D000361 ORTHO05D008498 1.3e-11 73.2 80 56.2
MSTRG.26309 Avicennia marina HOM05D000361 ORTHO05D008498 1.7e-11 72.8 80 56.2
GSVIVG01001046001 Vitis vinifera HOM05D000361 ORTHO05D008498 1.7e-11 72.8 79 58.2
Oeu028794.1 Olea europaea HOM05D000361 ORTHO05D008498 2.3e-11 72.4 80 56.2
Aqoxy1G00614 Aquilegia oxysepala HOM05D000361 ORTHO05D008498 3.0e-11 72.0 80 55.0
Gohir.D13G192200 Gossypium hirsutum HOM05D000361 ORTHO05D008498 3.0e-11 72.0 80 56.2
Gorai.013G218100 Gossypium raimondii HOM05D000361 ORTHO05D008498 3.0e-11 72.0 80 56.2
Atru.chr7.190 Acer truncatum HOM05D000361 ORTHO05D008498 3.9e-11 71.6 80 56.2
TPR.G15812 Trifolium pratense HOM05D000361 ORTHO05D008498 3.9e-11 71.6 80 56.2
Cc06_g23450 Coffea canephora HOM05D000361 ORTHO05D008498 5.1e-11 71.2 80 55.0
Migut.K00361 Erythranthe guttata HOM05D000361 ORTHO05D008498 5.1e-11 71.2 80 53.8
MD02G1011900 Malus domestica HOM05D000361 ORTHO05D008498 5.1e-11 71.2 80 53.8
MD15G1157500 Malus domestica HOM05D000361 ORTHO05D008498 5.1e-11 71.2 80 53.8
CSS0046490 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008498 6.6e-11 70.9 80 55.0
DCAR_014827 Daucus carota HOM05D000361 ORTHO05D008498 6.6e-11 70.9 80 53.8
Gorai.009G053400 Gossypium raimondii HOM05D000361 ORTHO05D014446 6.6e-11 70.9 80 55.0
Duzib168G1075 Durio zibethinus HOM05D000361 ORTHO05D008498 8.7e-11 70.5 80 55.0
Medtr4g116870 Medicago truncatula HOM05D000361 ORTHO05D008498 8.7e-11 70.5 80 55.0
SGA_v2.0_scaffold45G17059 Striga asiatica HOM05D000361 ORTHO05D008498 8.7e-11 70.5 80 53.8
SGA_v2.0_scaffold229G43357 Striga asiatica HOM05D000361 ORTHO05D008498 1.1e-10 70.1 80 53.8
Lj7A452G24 Lonicera japonica HOM05D000361 ORTHO05D008498 1.5e-10 69.7 80 53.8
Hund21617 Selenicereus undatus HOM05D000361 ORTHO05D008498 1.5e-10 69.7 80 55.0
vmacro21875 Vaccinium macrocarpon HOM05D000361 ORTHO05D008498 1.5e-10 69.7 80 53.8
HanXRQChr05g0141521 Helianthus annuus HOM05D000361 ORTHO05D008498 1.9e-10 69.3 84 52.4
Peaxi162Scf00347g00329 Petunia axillaris HOM05D000361 ORTHO05D008498 2.5e-10 68.9 80 55.0
ECA236G1460 Erigeron canadensis HOM05D000361 ORTHO05D008498 3.3e-10 68.6 80 53.8
Rhsim01G0049000 Rhododendron simsii HOM05D007151 ORTHO05D008498 5.6e-10 67.8 92 50.0
HPP92_010438 Vanilla planifolia HOM05D000361 ORTHO05D008498 9.6e-10 67.0 80 50.0
Lsat_1_v5_gn_8_60021 Lactuca sativa HOM05D000361 ORTHO05D008498 1.3e-09 66.6 84 52.4
Ah.14g078530 Amaranthus hybridus HOM05D000361 ORTHO05D008498 2.1e-09 65.9 79 51.9
Gohir.A05G050000 Gossypium hirsutum HOM05D000361 ORTHO05D008498 3.6e-09 65.1 80 53.8
Zm00001eb257900 Zea mays HOM05D000361 ORTHO05D008498 3.6e-09 65.1 80 50.0
Sabra18G0095900 Salix brachista HOM05D000361 ORTHO05D008498 4.8e-09 64.7 111 42.3
AagrBONN_evm.TU.Sc2ySwM_368.335 Anthoceros agrestis HOM05D000361 ORTHO05D008498 6.2e-09 64.3 80 50.0
Potri.018G112800 Populus trichocarpa HOM05D000361 ORTHO05D008498 6.2e-09 64.3 111 42.3
Nitab4.5_0000416g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008498 8.1e-09 63.9 80 50.0
Os02g0797400 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008498 8.1e-09 63.9 80 48.8
Potri.006G188700 Populus trichocarpa HOM05D000361 ORTHO05D008498 8.1e-09 63.9 111 42.3
Nitab4.5_0010178g0020 Nicotiana tabacum HOM05D000361 ORTHO05D008498 1.1e-08 63.5 80 50.0
FAN19G1199 Fragaria x ananassa HOM05D000082 ORTHO05D014446 1.4e-08 63.2 43 67.4
Manes.06G040400 Manihot esculenta HOM05D000361 ORTHO05D008498 1.4e-08 63.2 111 41.4
SMO340G0120 Selaginella moellendorffii HOM05D000361 ORTHO05D008498 1.4e-08 63.2 80 53.8
BcaC01g03150 Brassica carinata HOM05D000361 ORTHO05D008498 3.1e-08 62.0 80 48.8
DCAR_017896 Daucus carota HOM05D000361 ORTHO05D014446 4.0e-08 61.6 79 48.1
Thhalv10022493m.g Eutrema salsugineum HOM05D000361 ORTHO05D008498 5.3e-08 61.2 80 48.8
Pp3c1_32870 Physcomitrium patens HOM05D000361 ORTHO05D008498 5.3e-08 61.2 79 49.4
A03p44710 Brassica napus HOM05D000361 ORTHO05D008498 6.9e-08 60.8 80 48.8
C03p55560 Brassica napus HOM05D000361 ORTHO05D008498 6.9e-08 60.8 80 48.8
BolC3t17833H Brassica oleracea HOM05D000361 ORTHO05D008498 6.9e-08 60.8 80 48.8
BraA03t13606Z Brassica rapa HOM05D000361 ORTHO05D008498 6.9e-08 60.8 80 48.8
Carub.0013s0016 Capsella rubella HOM05D000361 ORTHO05D008498 6.9e-08 60.8 80 48.8
Sp3g25380 Schrenkiella parvula HOM05D000361 ORTHO05D008498 6.9e-08 60.8 80 48.8
Aa31sc130G100 Aethionema arabicum HOM05D000361 ORTHO05D008498 1.5e-07 59.7 80 47.5
AL3G44220 Arabidopsis lyrata HOM05D000361 ORTHO05D008498 2.6e-07 58.9 80 47.5
AT2G07690 Arabidopsis thaliana HOM05D000361 ORTHO05D008498 2.6e-07 58.9 80 47.5
Mapoly0006s0287 Marchantia polymorpha HOM05D000361 ORTHO05D008498 5.8e-07 57.8 74 51.4
THA.LOC104808931 Tarenaya hassleriana HOM05D000361 ORTHO05D008498 9.9e-07 57.0 111 40.5
CARHR104070 Cardamine hirsuta HOM05D000361 ORTHO05D008498 1.3e-06 56.6 80 46.2
Rhsim01G0133100 Rhododendron simsii HOM05D000361 ORTHO05D014446 2.2e-06 55.8 43 65.1
MCO13G108 Micromonas commoda HOM05D000361 ORTHO05D008498 6.4e-06 54.3 90 42.2
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 8.4e-06 53.9 76 47.4


User provided reference genes

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