Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 1.1e-110 403.3 205 100.0
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 3.6e-109 398.3 205 98.5
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 5.1e-95 351.3 197 88.3
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 5.6e-94 347.8 197 87.3
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 2.1e-93 345.9 197 86.8
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 4.0e-92 341.7 195 86.7
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.4e-89 333.2 193 83.4
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.7e-88 328.9 190 83.7
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.7e-87 326.2 194 81.4
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 5.1e-87 324.7 190 83.2
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.6e-87 324.3 192 82.8
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 9.6e-86 320.5 197 80.2
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.6e-85 319.7 197 80.7
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 2.8e-85 318.9 204 80.4
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 8.1e-85 317.4 196 79.6
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.4e-84 316.6 197 78.7
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.4e-84 316.6 197 78.7
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 3.1e-84 315.5 199 78.9
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 4.0e-84 315.1 201 77.6
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 2.6e-83 312.4 201 77.6
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 9.9e-83 310.5 203 76.8
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.3e-82 310.1 194 78.9
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 4.9e-82 308.1 194 78.4
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 8.4e-82 307.4 201 76.6
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 8.4e-82 307.4 201 79.1
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 8.4e-82 307.4 192 77.1
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.1e-81 307.0 193 78.2
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.1e-81 307.0 217 72.8
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.1e-81 307.0 204 76.0
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.4e-81 306.6 186 82.3
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.4e-81 306.6 194 80.4
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.4e-81 306.6 203 75.9
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.9e-81 306.2 198 79.8
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.4e-81 305.8 203 76.8
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 4.2e-81 305.1 205 73.7
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 4.2e-81 305.1 201 79.1
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.2e-81 305.1 176 84.7
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.6e-80 303.1 201 75.1
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.1e-80 302.8 205 74.1
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 2.7e-80 302.4 197 75.6
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 6.0e-80 301.2 201 75.6
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 6.0e-80 301.2 194 78.4
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 1.0e-79 300.4 190 77.9
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 1.0e-79 300.4 205 74.1
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 1.3e-79 300.1 205 73.7
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.3e-79 299.3 195 74.9
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.3e-79 299.3 190 77.4
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 3.0e-79 298.9 194 74.2
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 3.9e-79 298.5 193 76.7
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.9e-79 298.5 205 73.2
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.9e-79 298.5 194 74.7
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 5.1e-79 298.1 255 62.7
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 6.7e-79 297.7 198 74.7
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.7e-79 297.7 189 77.2
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.7e-79 297.7 189 77.2
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-78 296.6 189 76.7
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 3.3e-78 295.4 193 76.2
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 5.6e-78 294.7 253 62.1
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 9.6e-78 293.9 205 72.2
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 4.8e-77 291.6 197 75.6
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 4.8e-77 291.6 201 76.1
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 6.9e-76 287.7 187 77.0
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.5e-75 286.6 201 75.1
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 2.6e-75 285.8 190 72.1
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 2.2e-74 282.7 188 75.0
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 2.2e-74 282.7 187 73.8
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 2.2e-74 282.7 189 72.5
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 2.9e-74 282.3 188 72.3
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 3.8e-74 282.0 188 72.3
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 3.8e-74 282.0 190 72.6
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 3.8e-74 282.0 187 74.9
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 8.4e-74 280.8 190 75.3
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 1.4e-73 280.0 187 72.7
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 1.4e-73 280.0 187 72.7
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.4e-73 279.3 190 71.1
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 3.2e-73 278.9 188 71.8
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 3.2e-73 278.9 189 73.5
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 7.1e-73 277.7 189 72.5
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 3.5e-72 275.4 190 70.5
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 4.6e-72 275.0 187 72.7
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 6.0e-72 274.6 200 70.0
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 7.9e-72 274.2 204 68.6
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 3.0e-71 272.3 211 68.2
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 3.3e-70 268.9 187 70.1
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 9.6e-70 267.3 192 69.8
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.3e-69 266.9 163 79.1
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.1e-68 263.8 187 72.2
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 9.0e-68 260.8 185 69.2
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 8.7e-63 244.2 167 72.5
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.3e-61 240.4 164 72.0
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.3e-61 240.4 185 66.5
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 8.2e-61 237.7 202 61.4
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 1.4e-60 236.9 194 63.9
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.1e-60 235.7 194 61.9
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.3e-58 230.3 148 75.7
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 3.8e-58 228.8 188 63.3
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.6e-56 222.2 192 62.5
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.5e-54 216.9 145 75.2
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 3.1e-52 209.1 122 86.1
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 1.5e-51 206.8 141 74.5
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 9.4e-49 197.6 141 72.3
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 2.7e-48 196.1 252 49.6
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 5.7e-46 188.3 109 84.4
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 1.3e-45 187.2 112 83.9
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.4e-44 183.7 113 79.6
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 6.9e-44 181.4 137 67.9
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 2.6e-38 162.9 189 49.2
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.6e-38 162.9 116 73.3
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 1.7e-37 160.2 119 65.5
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 2.4e-36 156.4 199 45.7
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 2.6e-35 152.9 147 57.8
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 7.7e-35 151.4 84 85.7
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 3.8e-34 149.1 105 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 5.7e-30 135.2 141 51.8
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 3.6e-24 115.9 140 51.4
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.3e-21 107.5 133 47.4
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.4e-20 103.2 82 56.1
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 3.1e-20 102.8 62 79.0
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 5.4e-20 102.1 199 34.7
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.2e-17 92.4 82 51.2
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 1.4e-12 77.4 52 69.2
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 2.7e-11 73.2 109 42.2
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 7.8e-11 71.6 51 66.7
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.3e-09 65.9 55 50.9
LjContig00564g0014639 Lotus japonicus HOM05D002009 ORTHO05D030873 2.6e-06 56.6 34 76.5
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 2.6e-06 56.6 50 56.0


User provided reference genes

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