Gene: AT5G38890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G38890
  • Transcript Identifier AT5G38890.1
  • Gene Type Coding gene
  • Location Chr5 : 15569507-15570898 : positive

Gene Family Information

  • ID HOM05D000780
  • #Genes/#Species 758/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G38890.1
  • uniprot A2RVT9

Descriptions

  • Description Nucleic acid-binding, OB-fold-like protein
  • Computational description Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Exosome complex, component CSL4 (InterPro:IPR019495); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0015696
ISO
PLAZA Homology (enrichment)ammonium transport HOM05D000780
GO:0072488
ISO
PLAZA Homology (enrichment)ammonium transmembrane transport HOM05D000780

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0008519
ISO
PLAZA Homology (enrichment)ammonium transmembrane transporter activity HOM05D000780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009536
HDA
Gene Ontologyplastid1
GO:0000176
IBA
Gene Ontologynuclear exosome (RNase complex)2
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm2
GO:0000178
IEA
GOA Databaseexosome (RNase complex)
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0016020
ISO
PLAZA Homology (enrichment)membrane HOM05D000780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR039771 Exosome complex component Csl4
IPR025721 Exosome complex component, N-terminal domain
IPR019495 Exosome complex component CSL4, C-terminal
Mapman id Description
16.4.1.1.8 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component CSL4