Gene: Solyc04g050480.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g050480.4
  • Transcript Identifier Solyc04g050480.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 46501316-46507614 : negative

Gene Family Information

  • ID HOM05D000780
  • #Genes/#Species 758/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g050480.4.1
  • uniprot A0A3Q7G4A5
  • gene_id Solyc04g050480

Descriptions

  • Description Exosome complex component CSL4 (AHRD V3.3 *** A0A200PVM8_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0015696
ISO
PLAZA Homology (enrichment)ammonium transport HOM05D000780
GO:0072488
ISO
PLAZA Homology (enrichment)ammonium transmembrane transport HOM05D000780

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0008519
ISO
PLAZA Homology (enrichment)ammonium transmembrane transporter activity HOM05D000780

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IEA
GOA Databaseexosome (RNase complex)
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0005737
IBA
IEA
GOA Databasecytoplasm
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0016020
ISO
PLAZA Homology (enrichment)membrane HOM05D000780

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039771 Exosome complex component Csl4
IPR025721 Exosome complex component, N-terminal domain
IPR019495 Exosome complex component CSL4, C-terminal
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.4.1.1.8 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component CSL4