Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.9e-198 695.7 362 100.0
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 6.9e-172 607.4 361 90.3
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.1e-168 595.9 361 89.2
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 6.0e-115 418.3 265 81.9
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 1.9e-108 396.7 267 78.3
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 3.0e-106 389.4 265 77.7
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 9.5e-105 384.4 267 76.8
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 1.4e-103 380.6 265 76.2
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 2.4e-100 369.8 263 75.3
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 5.4e-100 368.6 263 74.9
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.7e-98 363.6 261 73.6
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.1e-97 360.9 285 74.4
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 3.3e-97 359.4 263 72.6
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.3e-97 359.4 257 75.1
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 5.6e-97 358.6 263 72.2
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 9.6e-97 357.8 265 72.8
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 1.2e-96 357.5 252 73.8
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 1.2e-96 357.5 266 72.6
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 2.1e-96 356.7 271 71.6
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 2.8e-96 356.3 263 72.6
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.8e-95 353.6 257 73.2
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 5.2e-95 352.1 257 73.2
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 6.9e-95 351.7 267 72.7
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 9.0e-95 351.3 266 71.8
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.2e-94 350.9 266 71.4
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 2.0e-94 350.1 269 69.9
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 4.4e-94 349.0 252 72.2
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 7.6e-94 348.2 261 70.5
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 7.6e-94 348.2 271 69.0
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 9.9e-94 347.8 269 71.0
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 1.7e-93 347.1 267 71.9
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.9e-93 345.5 251 72.9
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 6.4e-93 345.1 262 71.4
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 6.4e-93 345.1 265 71.3
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.1e-92 344.4 271 69.7
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 1.4e-92 344.0 266 69.2
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 1.9e-92 343.6 272 69.5
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.9e-92 343.6 264 70.5
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.4e-92 343.2 252 71.4
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 7.1e-92 341.7 266 70.7
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.1e-91 340.1 263 70.0
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.7e-91 339.7 250 72.8
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.0e-90 337.8 260 69.2
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.0e-90 337.8 262 70.2
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.3e-90 337.4 285 64.6
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.7e-90 337.0 262 68.3
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.0e-90 336.3 264 68.2
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 3.0e-90 336.3 269 68.0
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 6.6e-90 335.1 262 69.5
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 8.7e-90 334.7 264 67.8
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.9e-89 333.6 241 75.1
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 4.3e-89 332.4 252 70.2
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 4.3e-89 332.4 265 67.5
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.3e-89 332.4 273 67.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 2.1e-88 330.1 270 67.4
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 2.8e-88 329.7 269 67.7
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 2.8e-88 329.7 265 69.1
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 2.8e-88 329.7 267 67.4
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 2.8e-88 329.7 217 78.3
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 3.6e-88 329.3 253 69.2
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 4.8e-88 328.9 265 68.3
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 6.2e-88 328.6 267 67.4
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 8.1e-88 328.2 266 67.7
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 8.1e-88 328.2 267 66.3
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 1.1e-87 327.8 272 66.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 2.4e-87 326.6 264 67.0
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 2.4e-87 326.6 269 68.0
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.4e-87 326.6 269 68.0
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 6.9e-87 325.1 253 68.4
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 6.9e-87 325.1 254 67.7
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 6.9e-87 325.1 253 68.4
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 9.0e-87 324.7 253 68.4
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 1.2e-86 324.3 255 67.8
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.6e-86 323.2 257 66.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 2.6e-86 323.2 266 66.9
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 3.4e-86 322.8 265 66.4
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 3.4e-86 322.8 240 71.2
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 5.8e-86 322.0 253 70.0
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 5.8e-86 322.0 265 66.0
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 7.6e-86 321.6 241 72.2
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.7e-85 320.5 267 67.4
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 6.4e-85 318.5 262 66.4
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 9.3e-84 314.7 260 66.9
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 2.1e-83 313.5 271 65.3
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.1e-83 313.5 287 63.4
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 6.0e-83 312.0 287 63.1
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.8e-82 310.5 355 52.7
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.8e-82 310.5 276 62.0
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 3.0e-82 309.7 223 74.0
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 9.6e-81 304.7 255 64.3
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 3.7e-80 302.8 250 66.4
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 5.8e-78 295.4 268 64.2
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 7.6e-78 295.0 267 61.4
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.7e-77 293.9 261 64.0
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 1.9e-76 290.4 225 68.9
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 3.2e-76 289.7 241 65.6
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 7.1e-76 288.5 217 70.0
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 2.7e-75 286.6 220 69.5
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.1e-68 264.6 177 76.8
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 9.3e-68 261.5 269 59.5
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 6.0e-67 258.8 264 57.2
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.8e-64 250.0 179 72.1
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 4.5e-62 242.7 190 70.0
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 8.5e-61 238.4 184 71.2
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 9.3e-60 235.0 265 54.3
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 3.9e-58 229.6 258 50.4
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 6.3e-56 222.2 182 68.1
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.0e-54 217.2 250 52.0
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 5.5e-52 209.1 242 50.0
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 1.4e-50 204.5 269 45.0
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 1.7e-48 197.6 139 77.7
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 1.7e-45 187.6 244 45.1
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 4.7e-43 179.5 198 54.0
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 3.7e-40 169.9 170 50.6
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.0e-30 137.5 104 73.1
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 3.5e-30 136.7 120 60.8
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.0e-29 135.2 120 60.8
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 5.5e-28 129.4 138 55.1
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.1e-23 113.6 230 36.1
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 9.1e-23 112.1 93 62.4
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 1.7e-21 107.8 117 54.7
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 8.9e-18 95.5 100 55.0
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.8e-15 87.8 65 69.2
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 9.2e-15 85.5 74 58.1
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 2.5e-12 77.4 70 61.4
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 5.6e-12 76.3 68 64.7
arahy.Tifrunner.gnm1.ann1.IC3HGI Arachis hypogaea HOM05D001348 ORTHO05D008393 9.5e-12 75.5 55 78.2
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.8e-10 71.2 64 67.2
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 2.2e-08 64.3 50 68.0
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 1.1e-07 62.0 46 73.9
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.1e-07 62.0 64 59.4


User provided reference genes

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