Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 3547.3 1955 100.0
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 3533.4 1955 99.4
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2877.4 1921 82.5
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2877.0 1923 83.0
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2857.4 1914 82.1
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2821.2 1806 83.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2779.2 1922 80.5
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2747.6 1926 79.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2729.9 1916 78.9
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2683.7 1840 79.9
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2656.7 1880 77.3
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2638.2 1898 77.3
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2585.8 1898 75.9
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2543.8 1924 74.3
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2534.2 1938 73.1
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2528.4 1932 72.7
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2501.1 1930 72.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2494.2 1912 72.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2485.7 1937 71.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2478.7 1958 71.2
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2473.0 1932 72.0
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2464.5 1942 71.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2450.2 1922 71.7
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2449.5 1933 71.3
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2431.0 1939 71.1
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2419.8 1927 70.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2406.7 1792 72.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2406.3 1932 69.8
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2404.4 1940 69.0
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2402.9 1934 70.6
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2402.1 1901 71.1
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2395.9 1931 69.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2392.1 1927 69.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2381.7 1944 69.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2371.3 1934 69.3
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2366.3 1888 70.1
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2364.7 1934 69.5
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2364.3 1934 69.5
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2361.6 1833 69.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2357.8 1968 68.3
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2355.5 1932 68.4
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2354.3 2032 66.5
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2352.0 1930 69.3
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2349.3 1940 68.4
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2336.6 1967 67.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2325.8 1935 66.1
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2307.7 1932 67.6
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2306.2 1786 69.4
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2305.0 1924 68.7
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2290.8 1936 67.6
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2286.9 1919 68.0
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2282.7 1927 66.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2265.3 1943 66.4
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2258.8 1910 66.8
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2250.7 1902 66.7
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2243.0 1769 72.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2226.4 1934 66.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2224.1 1941 65.8
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2223.7 1810 67.6
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2217.6 1932 64.3
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2211.0 1903 66.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2211.0 1927 65.2
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2205.6 1930 64.4
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2204.1 1931 65.8
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2187.5 1936 64.9
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2187.1 1926 64.2
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2183.3 1926 65.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2175.2 1810 66.1
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2136.3 1904 65.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2120.1 1788 64.7
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2111.3 1805 64.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2109.3 1917 64.4
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2108.6 1936 62.8
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2107.8 1928 64.8
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2093.5 1918 63.1
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2048.5 1844 62.9
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2031.9 1922 62.6
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2024.6 1900 61.8
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2022.3 1924 61.4
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2016.5 1966 60.7
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1999.9 1819 61.2
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1992.2 1819 60.8
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1990.3 1691 65.5
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1963.0 1957 59.6
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1924.4 1925 58.7
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1909.8 1893 56.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1905.2 1865 58.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1895.9 1986 58.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1891.7 1932 59.0
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1887.1 1834 58.5
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1871.7 1865 58.1
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1869.7 1872 57.3
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1868.6 1875 57.3
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1868.2 1865 57.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1864.0 1872 57.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1862.8 1877 57.5
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1862.0 1868 57.0
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1860.9 1871 56.9
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1860.1 1729 61.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1859.3 1934 56.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1858.6 1871 57.0
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1855.5 1987 56.6
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1855.5 1987 56.6
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1853.2 1978 57.5
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1760.0 1847 55.8
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1651.7 1938 52.7
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1623.6 1233 71.7
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1617.1 1824 52.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1600.1 1231 72.3
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1501.9 1329 66.0
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1493.0 1477 59.8
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1492.2 1897 48.8
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1492.2 1897 48.8
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1489.6 1945 48.2
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1486.9 1938 49.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1484.5 1474 59.5
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1482.6 1233 68.1
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1475.7 1894 48.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1462.2 1948 49.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1331.2 1494 54.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1276.5 1786 46.1
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1264.2 1077 67.2
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1174.1 918 68.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1145.6 1039 64.5
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 6.4e-288 995.3 862 65.5
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 4.7e-283 979.2 837 67.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 5.2e-282 975.7 1947 40.1
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 3.4e-281 973.0 1424 47.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.0e-262 909.1 812 62.7
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.9e-258 895.6 1815 35.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 5.8e-249 865.9 824 59.3
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.4e-207 725.7 605 67.4
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 4.7e-206 723.4 709 58.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.7e-185 654.4 647 56.1
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.4e-180 637.1 643 53.7
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-170 605.5 497 65.4
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.5e-167 594.7 608 57.1
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.2e-165 587.0 455 70.8
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.3e-152 545.8 548 60.0
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 8.4e-147 526.6 539 58.8
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.0e-124 452.2 451 54.3
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 6.3e-118 430.6 398 59.8
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 6.1e-113 414.1 1251 28.7
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 9.4e-90 337.0 855 34.2
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.5e-84 318.2 651 35.6
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.9e-78 298.1 487 40.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.1e-77 297.0 273 73.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.4e-77 296.6 438 45.0
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.4e-77 296.6 2072 22.5
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 5.6e-74 284.6 262 61.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 8.0e-73 280.8 238 68.5
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.0e-71 276.2 404 42.1
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.4e-69 269.2 229 69.0
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.3e-64 252.7 199 71.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.7e-44 186.0 189 72.0
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.2e-29 136.0 204 43.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.2e-28 134.0 84 85.7
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 9.6e-18 97.8 63 74.6
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 6.2e-17 95.1 79 58.2
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 1.8e-16 93.6 130 70.0
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 6.9e-16 91.7 165 40.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.7e-14 87.0 49 73.5
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.3e-09 70.9 175 32.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.7e-09 69.3 33 87.9
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 6.9e-08 65.1 52 57.7
arahy.Tifrunner.gnm1.ann1.C9QR92 Arachis hypogaea HOM05D001518 ORTHO05D002719 4.5e-07 62.4 40 85.0
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 3.8e-06 59.3 55 54.5
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 8.5e-06 58.2 229 25.3


User provided reference genes

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