Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 1.3e-202 709.5 362 100.0
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 1.2e-179 633.3 425 79.8
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 2.5e-174 615.5 425 78.1
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 1.2e-142 510.4 413 67.8
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.4e-142 508.8 438 65.8
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 5.7e-142 508.1 439 65.6
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.7e-141 506.5 440 65.0
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 4.1e-140 501.9 418 65.6
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.0e-139 499.6 421 66.0
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.7e-139 499.2 429 64.8
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 7.7e-139 497.7 442 63.8
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 7.7e-139 497.7 426 65.0
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 2.2e-138 496.1 445 62.7
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 5.0e-138 495.0 443 64.1
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 4.0e-135 485.3 415 63.1
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 4.9e-133 478.4 420 61.4
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 6.3e-133 478.0 425 62.4
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.1e-132 477.2 413 63.0
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 3.1e-132 475.7 423 61.7
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 4.1e-132 475.3 411 62.3
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 5.4e-132 474.9 423 61.2
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 2.7e-131 472.6 413 62.7
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 4.5e-131 471.9 423 60.8
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 5.9e-131 471.5 423 60.3
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 7.8e-131 471.1 418 61.5
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 1.0e-130 470.7 422 61.1
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.7e-130 469.9 427 60.7
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 1.7e-130 469.9 410 62.9
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 3.8e-130 468.8 413 60.5
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 6.6e-130 468.0 413 60.8
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 1.1e-129 467.2 413 60.8
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 1.5e-129 466.8 416 61.3
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 3.3e-129 465.7 413 60.0
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 5.6e-129 464.9 413 60.0
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 9.5e-129 464.2 418 61.5
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 6.1e-128 461.5 433 58.9
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 2.3e-127 459.5 422 58.1
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 3.0e-127 459.1 418 60.8
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 5.2e-127 458.4 425 58.8
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 5.2e-127 458.4 420 59.3
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 5.2e-127 458.4 421 59.6
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 6.8e-127 458.0 448 57.1
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.5e-126 456.8 413 59.3
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 2.0e-126 456.4 411 59.9
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 2.6e-126 456.1 413 59.1
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 4.4e-126 455.3 426 58.5
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.8e-126 454.1 413 58.8
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 3.7e-125 452.2 421 58.4
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 4.9e-125 451.8 423 58.2
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 6.4e-125 451.4 423 58.2
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 6.4e-125 451.4 413 58.4
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 6.4e-125 451.4 410 60.0
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 8.3e-125 451.1 425 57.9
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 8.3e-125 451.1 422 59.2
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 1.4e-124 450.3 435 58.6
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 2.4e-124 449.5 413 60.8
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 3.2e-124 449.1 428 57.2
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 3.2e-124 449.1 423 57.9
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 4.1e-124 448.7 410 60.0
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 5.4e-124 448.4 424 57.1
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.2e-123 447.2 413 57.4
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 1.2e-123 447.2 429 56.4
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.6e-123 446.8 426 57.3
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 2.0e-123 446.4 417 58.3
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 2.0e-123 446.4 427 57.4
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.7e-123 446.0 425 57.2
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.7e-123 446.0 426 57.0
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 4.6e-123 445.3 426 57.0
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 4.6e-123 445.3 425 58.1
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 5.9e-123 444.9 425 56.9
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 5.9e-123 444.9 411 57.7
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.7e-122 443.4 411 58.6
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 2.3e-122 443.0 413 58.4
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 2.3e-122 443.0 413 58.4
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 2.3e-122 443.0 426 56.8
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 2.3e-122 443.0 409 57.0
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.0e-122 442.6 413 58.6
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.5e-121 440.3 411 59.6
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.5e-121 440.3 410 58.0
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.9e-121 439.9 413 58.4
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.5e-121 439.5 345 65.8
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 4.3e-121 438.7 413 58.1
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.6e-120 436.8 429 56.4
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 1.6e-120 436.8 429 56.4
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.4e-119 433.7 412 57.3
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 2.3e-119 433.0 426 56.8
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 1.5e-118 430.3 414 57.0
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 3.4e-118 429.1 432 54.9
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.4e-118 429.1 431 53.8
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 4.4e-118 428.7 431 55.2
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 7.5e-118 427.9 430 54.0
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.7e-117 426.8 430 55.1
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 2.2e-117 426.4 431 55.0
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 2.9e-117 426.0 430 55.6
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 1.1e-116 424.1 424 55.7
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.4e-116 423.7 430 54.9
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 4.1e-116 422.2 411 57.2
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 7.0e-116 421.4 412 56.1
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 2.7e-115 419.5 495 49.3
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 4.6e-115 418.7 412 55.1
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 4.6e-115 418.7 437 53.8
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 1.3e-114 417.2 425 53.6
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 1.7e-114 416.8 424 54.2
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 2.1e-112 409.8 444 51.8
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 5.8e-110 401.7 363 64.2
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.1e-108 397.5 423 54.6
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 5.4e-108 395.2 411 53.5
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 5.6e-105 385.2 416 51.2
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 7.3e-105 384.8 413 51.3
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 2.8e-104 382.9 411 49.9
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 4.7e-104 382.1 410 54.1
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 7.6e-102 374.8 425 52.2
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.2e-96 357.5 363 56.5
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.1e-95 354.4 414 46.1
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 2.0e-94 350.1 343 54.8
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 2.7e-91 339.7 416 46.2
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 3.8e-85 319.3 277 61.7
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 6.7e-82 308.5 471 39.3
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 1.3e-80 304.3 477 38.8
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 4.2e-76 289.3 302 53.3
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.3e-74 284.3 396 47.7
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.1e-71 274.6 313 51.4
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 1.2e-70 271.2 249 57.4
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 4.6e-67 259.2 201 66.2
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 5.1e-58 229.2 233 54.1
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 4.1e-55 219.5 187 63.6
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 5.3e-55 219.2 289 48.8
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 2.0e-49 200.7 334 41.9
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.1e-47 193.4 168 61.3
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 2.2e-45 187.2 407 31.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.6e-38 164.5 234 36.3
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 7.2e-36 155.6 228 36.0
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 9.4e-36 155.2 118 66.9
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 3.3e-33 146.7 135 57.0
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 4.0e-26 123.2 85 72.9
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 9.1e-23 112.1 58 93.1
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 2.7e-22 110.5 78 67.9
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 2.5e-20 104.0 62 77.4
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.3e-20 103.6 72 68.1
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 4.0e-18 96.7 70 65.7
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.7e-13 81.3 83 54.2
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 5.0e-13 79.7 89 51.7
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 2.5e-12 77.4 64 59.4
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 3.3e-12 77.0 49 73.5
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 3.3e-12 77.0 49 73.5
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 4.9e-08 63.2 59 55.9


User provided reference genes

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