Gene: COL.COLO4_17457
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_17457
- Transcript Identifier COL.rna16221
- Gene Type Coding gene
- Location AWUE01016343.1 : 89021-94914 : positive
Gene Family Information
- ID HOM05D005235
- #Genes/#Species 144/95
- Phylogenetic origin
- ID ORTHO05D000503
- #Genes/#Species 841/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna16221
- GenBank OMO92619.1
- id gene17429
- gene_name COLO4_17457
- uniprot A0A1R3JCS9
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006418 | IEA | GOA Database | tRNA aminoacylation for protein translation | |
| GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation | |
| GO:0006468 | IEA | GOA Database | protein phosphorylation | |
| GO:0006468 | IEA | InterPro | protein phosphorylation | |
| GO:0006437 | IEA | GOA Database | tyrosyl-tRNA aminoacylation | |
| GO:0006437 | IEA | InterPro | tyrosyl-tRNA aminoacylation | |
| GO:0007165 | ISO | PLAZA Integrative Orthology | signal transduction | AT3G14720 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT3G02660 |
| GO:0043622 | ISO | PLAZA Integrative Orthology | cortical microtubule organization | AT1G53510 |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0000165 | IEA | GOA Database | MAPK cascade | |
| GO:0016310 | IEA | GOA Database | phosphorylation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0004812 | IEA | GOA Database | aminoacyl-tRNA ligase activity | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004672 | IEA | GOA Database | protein kinase activity | |
| GO:0004672 | IEA | InterPro | protein kinase activity | |
| GO:0004831 | IEA | GOA Database | tyrosine-tRNA ligase activity | |
| GO:0004831 | IEA | InterPro | tyrosine-tRNA ligase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G14720 |
| GO:0106311 | IEA | GOA Database | protein threonine kinase activity | |
| GO:0106310 | IEA | GOA Database | protein serine kinase activity | |
| GO:0004707 | IEA | GOA Database | MAP kinase activity | |
| GO:0016874 | IEA | GOA Database | ligase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0004674 | IEA | GOA Database | protein serine/threonine kinase activity | |
| GO:0016301 | IEA | GOA Database | kinase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT3G02660 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G53510 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G02660 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G53510 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT3G02660 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002305 | Aminoacyl-tRNA synthetase, class Ic |
| IPR000719 | Protein kinase domain |
| IPR002307 | Tyrosine-tRNA ligase |
| IPR011009 | Protein kinase-like domain superfamily |
| IPR002942 | RNA-binding S4 domain |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| IPR036986 | RNA-binding S4 domain superfamily |