Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 3.8e-257 891.0 440 100.0
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 2.3e-254 881.7 440 98.9
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 2.5e-184 649.0 440 78.6
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 2.4e-174 615.9 444 67.8
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 3.1e-174 615.5 440 70.0
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 4.0e-174 615.1 440 70.9
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 5.3e-174 614.8 441 69.4
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.2e-173 613.6 444 67.6
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.0e-173 612.8 443 67.3
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 6.5e-164 581.3 433 67.2
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 1.2e-162 577.0 455 64.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 7.4e-160 567.8 439 66.3
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 9.7e-152 540.8 434 65.2
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 6.9e-150 534.6 438 63.2
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.4e-139 497.7 480 54.2
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 4.7e-138 495.4 428 57.2
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.7e-135 485.7 483 52.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 4.1e-134 482.3 441 55.1
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 4.1e-134 482.3 470 52.3
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 9.1e-134 481.1 461 56.2
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 5.9e-133 478.4 492 50.8
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 7.7e-133 478.0 482 52.9
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 5.5e-131 471.9 435 56.8
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 7.2e-131 471.5 505 50.3
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.0e-129 466.1 473 52.2
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 3.0e-129 466.1 473 50.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 8.8e-129 464.5 474 50.6
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 1.5e-128 463.8 489 50.5
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 2.0e-128 463.4 474 50.4
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.1e-126 457.6 494 48.6
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 9.1e-126 454.5 500 46.6
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.7e-125 453.0 462 50.9
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 3.5e-125 452.6 474 50.0
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 4.5e-125 452.2 495 48.5
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 2.9e-124 449.5 500 46.2
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 3.8e-124 449.1 475 50.1
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 2.7e-122 443.0 489 47.6
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 6.8e-121 438.3 542 44.5
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 8.8e-121 438.0 453 49.9
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 1.2e-120 437.6 549 45.4
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 2.6e-120 436.4 541 44.0
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.8e-120 434.5 448 50.9
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 9.8e-120 434.5 494 47.6
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.7e-119 433.7 437 50.1
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.7e-119 433.7 465 48.4
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 1.1e-118 431.0 452 49.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 2.4e-118 429.9 457 49.5
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 3.1e-118 429.5 431 49.9
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 7.7e-117 424.9 350 64.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 5.0e-116 422.2 459 47.1
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.5e-115 420.6 470 46.4
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 3.3e-115 419.5 446 50.2
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.8e-114 416.4 472 46.2
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 3.6e-114 416.0 489 46.2
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 5.2e-113 412.1 344 57.8
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 9.8e-112 407.9 440 48.2
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.3e-111 407.5 518 42.3
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 6.3e-111 405.2 487 43.1
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 8.3e-111 404.8 477 44.4
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.6e-109 400.6 439 48.1
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-109 400.6 583 39.8
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 3.5e-109 399.4 443 49.2
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 3.5e-109 399.4 478 44.6
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 4.5e-109 399.1 435 48.5
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 7.8e-109 398.3 344 56.1
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 2.9e-108 396.4 433 47.6
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 2.9e-108 396.4 345 61.2
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 5.0e-108 395.6 589 38.5
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.5e-107 394.0 470 46.6
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 1.9e-107 393.7 471 46.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 4.3e-107 392.5 484 43.2
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 4.3e-107 392.5 544 43.4
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 7.3e-107 391.7 470 46.2
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.3e-107 391.7 590 38.3
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 8.0e-106 388.3 477 45.7
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.1e-105 386.3 452 47.6
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.0e-105 386.0 605 37.2
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.2e-104 384.4 422 48.8
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.4e-104 382.5 461 47.3
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 2.2e-103 380.2 496 43.5
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.4e-103 378.6 448 45.3
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.1e-102 377.9 390 48.7
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.4e-102 377.5 499 43.1
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.1e-102 375.9 475 44.6
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 5.4e-102 375.6 432 45.6
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 3.5e-101 372.9 268 64.9
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 4.6e-101 372.5 337 57.0
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 4.6e-101 372.5 472 41.9
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.3e-100 370.2 268 63.4
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 6.6e-100 368.6 396 47.2
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 8.6e-100 368.2 379 49.6
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.2e-96 357.8 472 41.5
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.5e-96 357.5 480 41.2
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 5.4e-94 349.0 372 49.5
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 7.1e-94 348.6 417 45.1
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.1e-94 348.6 243 64.2
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 9.2e-94 348.2 243 64.2
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 7.8e-93 345.1 494 40.9
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.3e-92 343.6 315 54.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 3.9e-92 342.8 430 45.1
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 6.6e-92 342.0 479 42.0
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 6.6e-92 342.0 472 41.9
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 4.3e-91 339.3 463 41.7
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 9.5e-91 338.2 381 47.8
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 4.7e-90 335.9 474 41.1
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.5e-88 330.9 316 54.1
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.2e-87 327.0 418 44.3
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 8.3e-87 325.1 266 56.0
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.0e-85 318.9 377 47.5
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.0e-84 318.2 422 43.1
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 6.2e-82 308.9 260 56.2
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 8.4e-79 298.5 277 56.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.6e-77 294.3 402 44.0
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 6.0e-77 292.4 263 53.6
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.2e-74 282.3 400 42.2
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 8.4e-71 271.9 335 45.7
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 9.3e-70 268.5 590 31.9
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.9e-67 260.8 200 59.0
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 7.3e-67 258.8 316 44.0
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 2.1e-66 257.3 277 53.1
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 9.9e-64 248.4 477 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 5.4e-62 242.7 242 47.5
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 5.4e-62 242.7 428 35.3
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.6e-61 241.1 255 47.1
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 3.3e-59 233.4 501 31.5
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.6e-56 223.8 168 59.5
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.6e-45 188.0 133 61.7
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.7e-44 182.6 234 44.0
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.4e-33 148.3 184 37.0
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 9.1e-33 145.6 126 54.0
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.5e-32 144.8 424 30.7
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 4.5e-32 143.3 227 38.3
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 9.4e-30 135.6 144 49.3
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.4e-28 131.7 194 42.8
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 7.7e-24 115.9 220 37.7
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.9e-22 111.3 159 42.1
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 1.0e-20 105.5 220 35.0
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 4.4e-19 100.1 114 41.2
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 8.2e-18 95.9 88 50.0
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 1.1e-17 95.5 74 58.1
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.7e-16 90.9 90 54.4
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 3.5e-16 90.5 74 55.4
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.7e-15 88.2 180 36.1
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.8e-15 87.0 108 45.4
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.5e-14 84.3 89 50.6
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.8e-12 78.2 65 46.2
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 2.0e-11 74.7 63 44.4
TPR.G28185 Trifolium pratense HOM05D000121 ORTHO05D000102 4.8e-10 70.1 90 51.1
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 1.5e-06 58.5 105 31.4
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 1.9e-06 58.2 100 35.0
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.5e-06 57.8 78 38.5
BcaC02g09524 Brassica carinata HOM05D029228 ORTHO05D027443 7.2e-06 56.2 78 41.0


User provided reference genes

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