Gene: Sopen10g004780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g004780
  • Transcript Identifier Sopen10g004780.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 3159510-3166878 : positive

Gene Family Information

  • ID HOM05D004664
  • #Genes/#Species 156/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g004780.1

Descriptions

  • Description Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation. | SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2) | FUNCTIONS IN: DNA binding | INVOLVED IN: snRNA transcription, organ morphogenesis | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009926
ISO
PLAZA Integrative Orthologyauxin polar transport AT1G28560
GO:0071365
ISO
PLAZA Integrative Orthologycellular response to auxin stimulus AT1G28560
GO:0060184
ISO
PLAZA Integrative Orthologycell cycle switching AT1G28560
GO:0009301
ISO
PLAZA Integrative OrthologysnRNA transcription AT1G28560
GO:0043697
ISO
PLAZA Integrative Orthologycell dedifferentiation AT1G28560
GO:0071368
ISO
PLAZA Integrative Orthologycellular response to cytokinin stimulus AT1G28560
GO:0009945
ISO
PLAZA Integrative Orthologyradial axis specification AT1G28560
GO:1905392
ISO
PLAZA Integrative Orthologyplant organ morphogenesis AT1G28560
GO:0009942
ISO
PLAZA Integrative Orthologylongitudinal axis specification AT1G28560
GO:0010014
ISO
PLAZA Integrative Orthologymeristem initiation AT1G28560
GO:0010311
ISO
PLAZA Integrative Orthologylateral root formation AT1G28560

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G28560

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022042 snRNA-activating protein complex, subunit 3
Mapman id Description
15.3.3.7.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC3/SRD2