Gene: Solyc10g009000.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g009000.4
  • Transcript Identifier Solyc10g009000.4.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 2909879-2916435 : positive

Gene Family Information

  • ID HOM05D004664
  • #Genes/#Species 156/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g009000.4.1
  • uniprot A0A3Q7ICN2
  • gene_id Solyc10g009000

Descriptions

  • Description snRNA-activating protein complex subunit (AHRD V3.3 *** A0A2G2YJG8_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071365
ISO
PLAZA Integrative Orthologycellular response to auxin stimulus AT1G28560
GO:0010311
ISO
PLAZA Integrative Orthologylateral root formation AT1G28560
GO:0010014
ISO
PLAZA Integrative Orthologymeristem initiation AT1G28560
GO:0009942
ISO
PLAZA Integrative Orthologylongitudinal axis specification AT1G28560
GO:1905392
ISO
PLAZA Integrative Orthologyplant organ morphogenesis AT1G28560
GO:0009945
ISO
PLAZA Integrative Orthologyradial axis specification AT1G28560
GO:0071368
ISO
PLAZA Integrative Orthologycellular response to cytokinin stimulus AT1G28560
GO:0043697
ISO
PLAZA Integrative Orthologycell dedifferentiation AT1G28560
GO:0009301
ISO
PLAZA Integrative OrthologysnRNA transcription AT1G28560
GO:0060184
ISO
PLAZA Integrative Orthologycell cycle switching AT1G28560
GO:0009926
ISO
PLAZA Integrative Orthologyauxin polar transport AT1G28560
GO:0042796
IBA
GOA DatabasesnRNA transcription by RNA polymerase III
GO:0042795
IBA
GOA DatabasesnRNA transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000978
IBA
GOA DatabaseRNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001006
IBA
GOA DatabaseRNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0001046
IBA
GOA Databasecore promoter sequence-specific DNA binding
GO:0003681
IBA
GOA Databasebent DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0019185
IBA
GOA DatabasesnRNA-activating protein complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022042 snRNA-activating protein complex, subunit 3
Mapman id Description
15.3.3.7.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC3/SRD2