Gene: AT1G28560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G28560
  • Transcript Identifier AT1G28560.1
  • Gene Type Coding gene
  • Location Chr1 : 10038197-10040382 : negative

Gene Family Information

  • ID HOM05D004664
  • #Genes/#Species 156/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G28560.1
  • symbol SRD2
  • full_name SHOOT REDIFFERENTIATION DEFECTIVE 2
  • uniprot Q8L627

Descriptions

  • Description snRNA activating complex family protein
  • Computational description SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal (InterPro:IPR022042); Has 243 Blast hits to 241 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0060184
IMP
Gene Ontologycell cycle switching1
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0007049
IEA
GOA Databasecell cycle
GO:0042795
IBA
Gene OntologysnRNA transcription by RNA polymerase II2
GO:0042796
IBA
Gene OntologysnRNA transcription by RNA polymerase III2
GO:0010311
IMP
Gene Ontologylateral root formation3
GO:0009945
IMP
Gene Ontologyradial axis specification3
GO:0009942
IMP
Gene Ontologylongitudinal axis specification3
GO:0009926
IMP
Gene Ontologyauxin polar transport3
GO:0010014
IMP
Gene Ontologymeristem initiation4
GO:0071368
IEP
Gene Ontologycellular response to cytokinin stimulus5
GO:0071365
IEP
Gene Ontologycellular response to auxin stimulus5
GO:0043697
IMP
Gene Ontologycell dedifferentiation5
GO:0009301
IMP
Gene OntologysnRNA transcription5
GO:1905392
IMP
Gene Ontologyplant organ morphogenesis6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0001006
IBA
Gene OntologyRNA polymerase III type 3 promoter sequence-specific DNA binding2
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding2
GO:0003681
IBA
Gene Ontologybent DNA binding2
GO:0001046
IBA
Gene Ontologycore promoter sequence-specific DNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus5
GO:0019185
IBA
Gene OntologysnRNA-activating protein complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022042 snRNA-activating protein complex, subunit 3
Mapman id Description
15.3.3.7.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC3/SRD2