Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 5.8e-255 883.6 417 100.0
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 5.4e-253 877.1 417 99.3
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 6.9e-208 727.2 413 80.9
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 2.0e-207 725.7 420 80.5
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 3.4e-207 724.9 406 82.5
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 5.9e-207 724.2 420 81.4
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.3e-203 713.0 419 79.0
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 6.3e-201 704.1 415 79.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.8e-200 702.6 405 79.5
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.5e-191 672.9 412 75.5
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 6.5e-190 667.5 403 75.9
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 8.5e-190 667.2 403 75.9
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.1e-189 666.8 403 75.7
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 1.9e-189 666.0 387 78.0
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.4e-187 659.8 416 73.8
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 6.7e-187 657.5 416 74.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.1e-184 650.2 416 72.8
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 3.5e-183 645.2 401 74.6
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 5.9e-183 644.4 416 73.1
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.0e-182 643.7 344 84.3
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 2.2e-182 642.5 408 72.1
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 2.9e-182 642.1 417 72.9
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 8.5e-182 640.6 401 73.6
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.1e-181 640.2 387 76.2
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 2.5e-181 639.0 403 72.0
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 3.2e-181 638.6 416 71.6
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 3.2e-181 638.6 419 70.4
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 4.2e-181 638.3 403 73.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.2e-180 636.7 415 71.6
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 6.1e-180 634.4 403 71.2
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 2.3e-179 632.5 416 71.4
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 6.7e-179 630.9 418 70.8
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 2.0e-178 629.4 389 74.8
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.3e-178 628.6 413 70.9
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 3.7e-177 625.2 414 69.8
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 6.3e-177 624.4 403 71.7
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 8.2e-177 624.0 405 70.9
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.1e-176 623.6 461 64.6
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 3.1e-176 622.1 413 70.5
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 5.3e-176 621.3 412 72.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 5.3e-176 621.3 419 69.7
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.2e-175 620.2 386 72.0
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 3.5e-175 618.6 405 70.4
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.7e-174 616.3 415 68.0
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.5e-173 613.2 396 73.0
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.5e-173 613.2 416 68.0
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 4.2e-173 611.7 415 69.4
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 7.2e-173 610.9 388 71.6
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 9.4e-173 610.5 411 68.1
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 9.4e-173 610.5 415 70.1
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.7e-172 609.0 413 69.7
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-172 608.2 412 69.9
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 6.8e-171 604.4 415 66.7
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 8.8e-171 604.0 412 66.7
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 8.8e-171 604.0 463 63.7
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 4.4e-170 601.7 407 70.3
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 4.8e-169 598.2 416 67.5
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 8.3e-169 597.4 360 74.2
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.4e-168 595.9 405 67.4
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 5.4e-168 594.7 409 68.7
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 1.2e-167 593.6 415 67.0
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 4.5e-167 591.7 413 66.6
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 5.9e-167 591.3 403 66.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.9e-165 586.3 404 67.1
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.5e-165 585.9 401 68.3
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 4.2e-165 585.1 406 66.5
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 9.5e-165 583.9 407 67.3
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-164 583.2 419 65.4
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 2.1e-164 582.8 405 65.9
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 4.7e-164 581.6 407 66.3
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.0e-163 580.5 401 67.1
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 5.2e-163 578.2 410 67.3
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 7.5e-162 574.3 413 67.3
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.3e-161 573.5 410 66.8
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 2.2e-161 572.8 437 63.4
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 2.8e-161 572.4 417 64.5
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.4e-160 570.1 363 72.5
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 2.4e-160 569.3 417 64.0
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 7.0e-160 567.8 404 65.1
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.3e-158 562.8 408 63.5
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 1.5e-157 560.1 422 63.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.1e-156 556.2 345 71.6
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.0e-155 553.9 421 62.7
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 2.3e-155 552.7 375 67.7
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 5.2e-155 551.6 408 64.0
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 6.4e-153 544.7 404 61.4
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.4e-152 543.5 373 68.9
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 5.2e-147 525.0 299 77.6
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 9.8e-146 520.8 438 59.1
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.9e-144 516.5 364 66.8
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-144 516.2 364 66.8
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 3.2e-144 515.8 413 60.5
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 8.6e-142 507.7 367 66.5
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 4.0e-139 498.8 336 67.3
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.6e-138 496.1 421 59.9
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.6e-135 486.9 421 55.3
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 2.1e-135 486.5 378 61.4
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 3.9e-134 482.3 421 55.3
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-133 479.9 410 60.0
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 4.7e-132 475.3 351 64.1
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-131 474.2 354 64.1
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.4e-131 473.8 320 69.7
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 1.5e-130 470.3 351 63.8
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 9.9e-130 467.6 307 71.0
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-128 463.8 408 58.1
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 9.2e-128 461.1 371 59.3
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.6e-127 460.3 371 58.2
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 6.0e-127 458.4 400 57.0
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 8.9e-123 444.5 409 54.3
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.2e-121 439.9 407 53.3
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.7e-118 430.3 320 63.4
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 3.1e-115 419.5 358 58.1
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-114 416.4 416 52.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-111 407.1 253 71.9
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.3e-108 397.5 251 75.3
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 1.6e-108 397.1 436 47.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 4.5e-106 389.0 274 66.8
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.5e-101 374.0 283 57.6
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 9.0e-99 364.8 260 67.3
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.1e-96 355.1 272 62.9
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 2.1e-95 353.6 415 45.1
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.3e-94 350.9 199 78.9
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 7.4e-93 345.1 200 77.0
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.8e-92 342.4 341 53.7
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.7e-86 322.0 202 73.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.3e-84 315.5 202 71.8
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-82 310.1 197 72.6
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.1e-79 300.4 404 41.6
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.4e-75 287.7 167 76.0
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 3.6e-71 273.1 296 43.2
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 2.4e-67 260.4 165 71.5
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-58 231.5 144 73.6
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-58 231.5 144 73.6
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-58 231.5 144 73.6
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-58 231.1 194 59.3
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-57 228.0 144 72.9
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-54 216.1 154 66.2
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 2.0e-53 214.2 216 52.8
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.6e-50 204.5 115 79.1
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.0e-46 189.9 186 50.5
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-42 177.6 96 79.2
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 2.6e-37 160.6 86 82.6
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 9.2e-35 152.1 108 63.9
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.1e-30 138.7 100 64.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 1.2e-29 135.2 84 71.4
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-24 118.6 75 70.7
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-22 110.9 74 70.3
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 2.2e-20 104.4 51 90.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.0e-13 81.3 72 51.4
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 1.3e-12 78.6 57 64.9
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-12 77.0 137 38.7
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.4e-11 74.3 43 72.1
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 4.6e-10 70.1 36 86.1
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 7.8e-10 69.3 66 51.5
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 1.3e-09 68.6 65 53.8
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-08 63.9 52 51.9
arahy.Tifrunner.gnm1.ann1.GV0XVU Arachis hypogaea HOM05D001147 ORTHO05D000823 2.8e-07 60.8 29 93.1


User provided reference genes

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