Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 4.1e-187 657.9 332 100.0
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 3.5e-186 654.8 332 99.4
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 4.3e-168 594.7 332 88.9
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 5.6e-168 594.3 332 89.2
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.5e-165 586.3 332 88.0
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.6e-162 576.2 332 85.8
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 2.0e-162 575.9 332 87.7
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 7.8e-162 573.9 332 85.5
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 8.6e-161 570.5 332 84.6
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.5e-160 568.9 332 84.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 6.2e-159 564.3 333 83.5
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.1e-158 563.5 332 83.7
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 9.2e-155 550.4 332 82.2
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 3.0e-153 545.4 354 80.2
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 3.0e-153 545.4 354 80.2
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 8.1e-151 537.3 332 81.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 9.2e-147 523.9 330 78.8
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.3e-145 519.2 333 77.2
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 5.1e-145 518.1 333 75.7
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.5e-144 516.5 334 76.9
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 1.6e-143 513.1 339 76.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.6e-143 511.9 332 75.9
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 4.7e-143 511.5 333 76.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.2e-141 506.9 330 75.8
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.0e-141 506.1 331 75.8
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.7e-140 503.1 333 74.8
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.2e-140 502.7 334 77.8
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.9e-140 502.3 333 75.4
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 8.4e-140 500.7 337 75.7
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.1e-139 500.4 331 74.9
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.9e-139 499.6 333 76.9
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.4e-139 499.2 330 75.8
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.2e-139 498.8 334 74.6
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.1e-138 496.1 331 74.0
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.3e-137 493.4 335 74.6
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.3e-137 492.7 334 74.3
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 8.7e-137 490.7 333 73.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.5e-136 490.0 333 75.1
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.5e-136 490.0 337 74.8
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 5.6e-136 488.0 332 73.5
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 7.3e-136 487.6 335 73.7
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 9.6e-136 487.3 333 73.3
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.1e-135 486.1 334 72.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.8e-135 485.7 336 73.5
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 6.2e-135 484.6 336 73.2
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.1e-134 483.8 333 71.2
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.4e-134 483.4 335 72.8
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.8e-134 483.0 338 73.7
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 2.4e-134 482.6 331 74.3
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 5.3e-134 481.5 338 73.7
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.3e-134 481.5 335 72.8
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.6e-133 479.2 318 74.2
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 2.6e-133 479.2 335 73.4
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 5.8e-133 478.0 333 72.1
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-132 476.5 335 71.9
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.2e-132 476.1 338 71.0
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.4e-132 474.6 339 71.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.4e-132 474.6 339 71.7
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 71.5
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.1e-131 473.8 335 71.6
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 70.3
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.9e-131 473.0 335 71.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.9e-131 473.0 338 70.1
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 2.4e-131 472.6 335 71.9
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.4e-131 471.5 341 69.2
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 5.4e-131 471.5 324 72.2
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 9.3e-131 470.7 333 72.1
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.6e-130 469.9 331 72.2
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.7e-130 469.2 334 71.3
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.7e-130 469.2 335 71.3
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.5e-130 468.8 338 70.7
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 3.5e-130 468.8 338 69.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.6e-130 468.4 341 71.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 6.0e-130 468.0 338 70.4
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.0e-129 467.2 334 71.0
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.8e-129 466.5 334 70.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 5.1e-129 464.9 379 65.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.1e-129 464.9 335 71.0
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.7e-129 464.2 330 69.4
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.9e-128 463.0 339 70.5
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.5e-128 462.6 333 71.5
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 5.6e-128 461.5 330 68.2
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 9.6e-128 460.7 354 66.7
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.8e-127 459.1 323 71.8
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 4.8e-127 458.4 341 70.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.4e-126 456.8 334 70.4
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.4e-126 456.1 331 69.8
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.5e-125 453.4 331 69.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.2e-124 449.5 328 70.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.2e-124 449.5 328 70.1
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.2e-124 449.5 340 68.8
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.9e-123 446.4 339 68.7
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.9e-123 446.4 347 69.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 2.1e-122 443.0 338 68.9
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.5e-122 442.2 330 67.0
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 7.9e-122 441.0 334 66.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 2.3e-121 439.5 334 67.7
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.3e-121 439.5 338 67.2
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 4.3e-120 435.3 339 65.8
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 4.5e-117 425.2 339 66.4
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.2e-116 422.9 341 65.1
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 3.5e-114 415.6 333 65.2
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.3e-113 413.7 355 64.5
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 9.0e-110 401.0 358 62.3
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.5e-109 398.7 337 62.6
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 5.5e-107 391.7 353 61.5
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.7e-106 389.4 263 74.5
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 4.6e-106 388.7 352 59.7
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 8.2e-103 377.9 341 59.5
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.5e-101 373.6 284 69.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 2.0e-101 373.2 321 63.9
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 4.5e-101 372.1 343 59.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.5e-101 372.1 328 59.1
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 5.0e-100 368.6 354 59.0
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 6.5e-100 368.2 334 59.0
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.8e-92 342.4 320 60.0
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.7e-88 328.6 230 72.2
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.9e-85 318.5 187 85.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 1.4e-81 307.4 254 64.2
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.5e-75 287.3 246 64.2
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.1e-74 283.5 212 67.9
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.4e-73 280.8 363 45.7
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.1e-66 256.9 267 58.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 3.4e-64 249.6 190 67.4
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 7.8e-61 238.4 382 41.9
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.1e-59 234.6 346 44.5
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.5e-59 234.2 358 42.5
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.5e-59 233.4 347 42.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.0e-53 213.8 214 56.5
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.5e-51 206.8 349 41.8
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.6e-50 204.1 223 52.5
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.2e-45 188.0 173 52.6
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 3.0e-44 183.3 368 36.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.7e-39 166.4 356 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 3.0e-36 156.8 329 35.6
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 9.2e-30 135.2 119 63.0
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 2.5e-27 127.1 349 32.1
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 3.3e-27 126.7 147 51.0
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.1e-26 124.0 125 52.8
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 8.1e-26 122.1 140 47.1
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-24 115.2 85 64.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 9.9e-24 115.2 94 58.5
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.4e-23 112.5 103 60.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 105 53.3
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-22 110.2 94 56.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 2.5e-19 100.5 153 37.3
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 1.3e-18 98.2 337 27.6
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.3e-17 92.8 80 61.2
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 3.4e-16 90.1 54 74.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.7e-15 87.8 60 71.7
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 7.1e-14 82.4 72 52.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.3e-12 78.2 40 87.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.7e-10 70.1 163 33.7
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 6.9e-09 65.9 171 26.3
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-08 64.3 52 57.7
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 4.5e-08 63.2 43 62.8


User provided reference genes

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