Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6276X8 Arachis hypogaea HOM05D000104 ORTHO05D023764 2.9e-108 395.2 195 100.0
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 2.2e-39 166.4 149 67.1
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 4.6e-37 158.7 169 59.8
Lalb_Chr10g0106381 Lupinus albus HOM05D000104 ORTHO05D004881 1.9e-30 136.7 169 54.4
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 7.1e-30 134.8 169 52.1
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 3.5e-29 132.5 169 51.5
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 1.3e-28 130.6 169 51.5
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 1.3e-28 130.6 167 52.1
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 2.3e-28 129.8 171 51.5
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 2.3e-28 129.8 169 50.9
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 5.1e-28 128.6 169 50.3
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 5.1e-28 128.6 169 49.7
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 5.1e-28 128.6 169 49.7
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 7.3e-27 124.8 170 48.2
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 9.6e-27 124.4 169 47.9
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 6.2e-26 121.7 172 46.5
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 6.2e-26 121.7 172 46.5
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 6.2e-26 121.7 169 48.5
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 8.1e-26 121.3 172 48.3
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 1.1e-25 120.9 167 49.7
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 1.1e-25 120.9 172 47.1
Psat2g019600 Pisum sativum HOM05D000104 ORTHO05D004881 1.1e-25 120.9 169 46.7
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 1.8e-25 120.2 172 45.3
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 3.1e-25 119.4 172 44.2
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 3.1e-25 119.4 172 44.2
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 5.3e-25 118.6 172 46.5
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 5.3e-25 118.6 167 47.9
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 5.3e-25 118.6 169 47.9
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 6.9e-25 118.2 169 47.9
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 6.9e-25 118.2 169 47.9
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 6.9e-25 118.2 169 47.9
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 9.0e-25 117.9 167 49.7
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 1.2e-24 117.5 176 45.5
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 1.2e-24 117.5 88 70.5
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 1.2e-24 117.5 172 43.0
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.5e-24 117.1 169 47.3
GSVIVG01037235001 Vitis vinifera HOM05D000104 ORTHO05D004881 1.5e-24 117.1 169 46.2
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 2.6e-24 116.3 167 47.9
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 4.5e-24 115.5 151 47.0
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 4.5e-24 115.5 172 45.3
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 4.5e-24 115.5 172 45.3
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 5.8e-24 115.2 169 46.7
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 5.8e-24 115.2 172 44.8
Lj1C295T5 Lonicera japonica HOM05D000104 ORTHO05D004881 2.9e-23 112.8 167 44.9
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 2.9e-23 112.8 167 44.9
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 2.9e-23 112.8 169 46.7
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 8.4e-23 111.3 170 45.3
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 1.1e-22 110.9 169 45.0
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 1.1e-22 110.9 168 45.2
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 1.4e-22 110.5 169 45.0
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.4e-22 109.8 90 66.7
Cpa.g.sc892.1 Carica papaya HOM05D000104 ORTHO05D004881 3.2e-22 109.4 89 65.2
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 5.4e-22 108.6 167 45.5
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 5.4e-22 108.6 168 44.6
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 7.1e-22 108.2 168 44.6
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 7.1e-22 108.2 169 43.2
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 9.3e-22 107.8 168 44.6
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 9.3e-22 107.8 89 65.2
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 9.3e-22 107.8 168 43.5
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 1.2e-21 107.5 169 43.2
TPR.G8484 Trifolium pratense HOM05D000104 ORTHO05D004881 1.2e-21 107.5 90 65.6
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 1.6e-21 107.1 168 44.0
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 2.1e-21 106.7 205 39.5
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 3.5e-21 105.9 168 44.0
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 4.6e-21 105.5 166 44.6
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 4.6e-21 105.5 169 42.0
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 6.0e-21 105.1 169 42.6
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 7.9e-21 104.8 172 40.7
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 7.9e-21 104.8 168 42.3
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 7.9e-21 104.8 172 41.9
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 1.3e-20 104.0 172 40.7
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 2.3e-20 103.2 172 40.7
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 2.3e-20 103.2 169 43.2
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 5.1e-20 102.1 170 41.2
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 5.1e-20 102.1 166 42.8
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 6.7e-20 101.7 169 43.2
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 6.7e-20 101.7 167 43.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 8.7e-20 101.3 168 42.3
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 8.7e-20 101.3 167 41.9
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 1.1e-19 100.9 171 42.1
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 1.1e-19 100.9 166 42.8
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 1.1e-19 100.9 169 43.2
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 1.9e-19 100.1 175 42.3
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 2.5e-19 99.8 88 61.4
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 2.5e-19 99.8 165 46.1
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 3.3e-19 99.4 168 41.7
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 5.6e-19 98.6 176 39.8
CARHR105150 Cardamine hirsuta HOM05D000104 ORTHO05D004881 5.6e-19 98.6 170 40.6
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 7.4e-19 98.2 169 42.6
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 7.4e-19 98.2 169 42.6
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 7.4e-19 98.2 169 42.6
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 7.4e-19 98.2 169 42.6
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 7.4e-19 98.2 165 45.5
PGSC0003DMG400004650 Solanum tuberosum HOM05D000104 ORTHO05D004881 7.4e-19 98.2 165 45.5
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 7.4e-19 98.2 166 42.2
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 9.6e-19 97.8 167 43.7
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 1.3e-18 97.4 170 40.6
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 1.3e-18 97.4 165 42.4
Psat5g195040 Pisum sativum HOM05D000104 ORTHO05D023764 1.3e-18 97.4 90 60.0
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 2.1e-18 96.7 169 42.0
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 3.7e-18 95.9 167 41.9
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 4.8e-18 95.5 166 39.8
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 4.8e-18 95.5 167 43.1
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 8.1e-18 94.7 166 37.3
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 9.0e-17 91.3 174 39.1
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 9.0e-17 91.3 171 36.3
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 1.5e-16 90.5 170 40.6
HPP92_006716 Vanilla planifolia HOM05D000104 ORTHO05D004881 1.5e-16 90.5 167 38.9
Os07g0660200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004881 1.7e-15 87.0 168 38.7
CDE08G1000 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 2.2e-15 86.7 168 38.1
Lsat_1_v5_gn_4_21281 Lactuca sativa HOM05D000104 ORTHO05D023764 2.9e-15 86.3 176 38.6
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 1.2e-13 80.9 168 35.1
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 1.6e-13 80.5 128 45.3
SMO117G0029 Selaginella moellendorffii HOM05D000104 ORTHO05D004881 2.7e-13 79.7 165 32.7
Mapoly0005s0060 Marchantia polymorpha HOM05D000104 ORTHO05D004881 1.9e-11 73.6 89 40.4
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 1.3e-10 70.9 89 48.3
Pp3c6_10390 Physcomitrium patens HOM05D000104 ORTHO05D004881 1.4e-09 67.4 90 40.0
Pp3c5_19940 Physcomitrium patens HOM05D000104 ORTHO05D004881 1.8e-09 67.0 90 38.9
Dinv36192 Davidia involucrata HOM05D000104 ORTHO05D004881 1.3e-07 60.8 171 33.9


User provided reference genes

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